View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9705_low_19 (Length: 264)
Name: NF9705_low_19
Description: NF9705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9705_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 111 - 237
Target Start/End: Original strand, 655053 - 655179
Alignment:
| Q |
111 |
cgacggcagaagctaagaagcacacatatagaatatcatgacaaaaatggaaactgaccaagtcaatgtgataaatgctaagcaatttaagnnnnnnnca |
210 |
Q |
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| T |
655053 |
cgacggcagaagctaagaagcacacatatagaatatcatgacaaaaatggaaactgaccaagtcaatgtgataaatgctaagcaatttaagaaaaaaaca |
655152 |
T |
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| Q |
211 |
ataatctccaaaatgaatactaatttt |
237 |
Q |
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| T |
655153 |
ataatctccaaaatgagtactaatttt |
655179 |
T |
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Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 654346 - 654439
Alignment:
| Q |
17 |
ggaaggagggtatgtactaatatagtcaaagataagattattagataaggttccatctaaatggttggtgaagaatgtgaagatcaatattgac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
654346 |
ggaaggagggtatgtactaatatagtcaaagataagattattagataaggttccatctaaatggttggtgaagaatgtgaagatcaatattgac |
654439 |
T |
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