View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9705_low_20 (Length: 254)
Name: NF9705_low_20
Description: NF9705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9705_low_20 |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 36968875 - 36969099
Alignment:
| Q |
15 |
gaggacgatgatgataacagtgacgtcgttgataacggtgacgaagttgattatcaaactagtaacggccgtcgagttctccgttctcgttacctcgccg |
114 |
Q |
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| T |
36968875 |
gaggacgatgatgataacagtgacgtcgttgataacggtgacgaagttgattatcaaactagtaacggccgtcgagttctccgttctcgttacctcgccg |
36968974 |
T |
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| Q |
115 |
tccagaacttgattcacggtggtaattcaattttattcaacactcattctgttttttgattctgttacgagtttcatttttcttgcatgtttctatttct |
214 |
Q |
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| T |
36968975 |
tccagaacttgattcgcggtggtaattcaattttattcaacactcattctgttttttgattctgttacgagtttcatttttcttgcatgtttctatttct |
36969074 |
T |
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| Q |
215 |
gtagagaatccagaaatgagaaaac |
239 |
Q |
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| T |
36969075 |
gtagagaatccagaaatgagaaaac |
36969099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 54 - 239
Target Start/End: Original strand, 21723501 - 21723694
Alignment:
| Q |
54 |
gacgaagttgattatcaaactagtaacggccgtcgagttctccgttctcgttacctcgccgtccagaacttgattcacggtggtaattcaattttattca |
153 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||||||| | |||||||||||||||| |
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| T |
21723501 |
gacgaagttgattatcaaactagtaacgaccgtcgagatctccgttctcgttaccgcgccgtccagaacatgattcacggtaggaattcaattttattca |
21723600 |
T |
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| Q |
154 |
acactcattctgttttttgattctgttacgagtttcat--------ttttcttgcatgtttctatttctgtagagaatccagaaatgagaaaac |
239 |
Q |
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| T |
21723601 |
acgctcattctgttttctaattctgtttcgagtttcatattatttatttttttgcatgtttttacttctgtagagaatccagaaatgagaaaac |
21723694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 54 - 239
Target Start/End: Original strand, 32137 - 32330
Alignment:
| Q |
54 |
gacgaagttgattatcaaactagtaacggccgtcgagttctccgttctcgttacctcgccgtccagaacttgattcacggtggtaattcaattttattca |
153 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||||||| | |||||||||||||||| |
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| T |
32137 |
gacgaagttgattatcaaactagtaacgaccgtcgagatctccgttctcgttaccgcgccgtccagaacatgattcacggtaggaattcaattttattca |
32236 |
T |
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| Q |
154 |
acactcattctgttttttgattctgttacgagtttcat--------ttttcttgcatgtttctatttctgtagagaatccagaaatgagaaaac |
239 |
Q |
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| T |
32237 |
acgctcattctgttttctaattctgtttcgagtttcatattatttatttttttgcatgtttttacttctgtagagaatccagaaatgagaaaac |
32330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 54 - 191
Target Start/End: Complemental strand, 13379425 - 13379288
Alignment:
| Q |
54 |
gacgaagttgattatcaaactagtaacggccgtcgagttctccgttctcgttacctcgccgtccagaacttgattcacggtggtaattcaattttattca |
153 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||| |||||||||||||||||| |
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| T |
13379425 |
gacgaagttgattatcaaactagtaacggccgtcgagttctccgttctcgttatctcgctgtccagaacatgattcaaggtagtaattcaattttattca |
13379326 |
T |
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| Q |
154 |
acactcattctgttttttgattctgttacgagtttcat |
191 |
Q |
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| T |
13379325 |
acgctcattatgttttctaattctgttacgagtttcat |
13379288 |
T |
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