View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9705_low_21 (Length: 250)
Name: NF9705_low_21
Description: NF9705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9705_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 7183790 - 7183572
Alignment:
| Q |
1 |
tacctcaatttatcaccccaaacactcgcaatcctgtagagaaagaaagcacggtcgatgattgcatgtgttcgtcggaaagtagaatcagattgaattg |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| || || |||||||||||||||||||||| |||||||| ||||||||| |||||| |
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| T |
7183790 |
tacctcaatttattaccccaaacactcgcaatcctgtagagaaaggaatcatggtcgatgattgcatgtgttcgccggaaagttgaatcagatcgaattg |
7183691 |
T |
|
| Q |
101 |
caagagaaggattcgatgaatctagtcaccggaatcgtggattgtaatcagatgtcagaatcgaagaagatagggaagagtgattcagatctgatatgag |
200 |
Q |
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| T |
7183690 |
cgagagaaggattcgatgaatctagtcaccggaatcgtggatcgtaatcagatgtcacaatcgaagaagagagggaagagtgattcagatatgatacgag |
7183591 |
T |
|
| Q |
201 |
ttgtgtaactcaattgccc |
219 |
Q |
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||||||||||||||||||| |
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| T |
7183590 |
ttgtgtaactcaattgccc |
7183572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 15912547 - 15912761
Alignment:
| Q |
1 |
tacctcaatttatcaccccaaacactcgcaatcctgtagagaaagaaagcacggtcgatgattgcatgtgttcgtcggaaagtagaatcagattgaattg |
100 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||||||| || || |||||||||||||||||||||| | ||||| ||||||||| ||| || |
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| T |
15912547 |
tacctcaatttattaccccaaacactcgcaatcatgtagagaaaggaatcatggtcgatgattgcatgtgttcgccataaagttgaatcagatcgaaatg |
15912646 |
T |
|
| Q |
101 |
caagagaaggattcgatgaatctagtcaccggaatcgtggattgtaatcagatgtcagaatcgaagaagatagggaagagtgattcagatctgatatgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
15912647 |
tgagagaaggattcgatgaatctagtcaccggaatcttggatcgtaatcggatgtcagaatcgaagaagagagggaagagtgattcagatctgatacgag |
15912746 |
T |
|
| Q |
201 |
ttgtgtaactcaatt |
215 |
Q |
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|||||||||| |||| |
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| T |
15912747 |
ttgtgtaacttaatt |
15912761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 8334905 - 8334814
Alignment:
| Q |
32 |
tcctgtagagaaagaaagcacggtcgatgattgcatgtgttcgtcgg-aaagtagaatcagattgaattgcaagagaaggattcgatgaatc |
122 |
Q |
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|||||||||||||| | ||| |||||||||| |||||||| ||| ||||| ||||||||| ||||||||||||||||||| |||||||| |
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| T |
8334905 |
tcctgtagagaaaggattcacaatcgatgattgagtgtgttcgccgggaaagttgaatcagatcgaattgcaagagaaggatttgatgaatc |
8334814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 21187057 - 21187124
Alignment:
| Q |
55 |
tcgatgattgcatgtgttcgtcgg-aaagtagaatcagattgaattgcaagagaaggattcgatgaat |
121 |
Q |
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| T |
21187057 |
tcgatgattgcgtgtgtttgccgggaaagtttaatcagattgaattgcgagagaaggatgcgatgaat |
21187124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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