View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9705_low_23 (Length: 246)

Name: NF9705_low_23
Description: NF9705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9705_low_23
NF9705_low_23
[»] chr7 (7 HSPs)
chr7 (110-236)||(34961727-34961853)
chr7 (47-101)||(34961908-34961962)
chr7 (1-30)||(22741289-22741318)
chr7 (1-29)||(14967616-14967644)
chr7 (1-29)||(15397092-15397120)
chr7 (1-29)||(38451947-38451975)
chr7 (1-29)||(42887238-42887266)
[»] chr6 (3 HSPs)
chr6 (1-31)||(6530185-6530215)
chr6 (1-29)||(12127892-12127920)
chr6 (1-29)||(35190847-35190875)
[»] chr5 (3 HSPs)
chr5 (4-34)||(11246470-11246500)
chr5 (1-31)||(23925627-23925657)
chr5 (1-29)||(5156981-5157009)
[»] chr4 (5 HSPs)
chr4 (1-31)||(9285640-9285670)
chr4 (1-34)||(39992919-39992952)
chr4 (1-29)||(3465667-3465695)
chr4 (1-29)||(37739190-37739218)
chr4 (1-29)||(52560848-52560876)
[»] chr2 (4 HSPs)
chr2 (1-31)||(34620602-34620632)
chr2 (1-29)||(29664687-29664715)
chr2 (1-29)||(37246449-37246477)
chr2 (1-29)||(41699461-41699489)
[»] chr8 (3 HSPs)
chr8 (4-33)||(25408673-25408702)
chr8 (2-34)||(4354775-4354807)
chr8 (1-29)||(36359701-36359729)
[»] chr3 (2 HSPs)
chr3 (1-30)||(2393285-2393314)
chr3 (1-29)||(13874817-13874845)
[»] scaffold0044 (1 HSPs)
scaffold0044 (1-29)||(49904-49932)
[»] scaffold0039 (1 HSPs)
scaffold0039 (1-29)||(101915-101943)
[»] chr1 (1 HSPs)
chr1 (1-29)||(9527510-9527538)


Alignment Details
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 110 - 236
Target Start/End: Complemental strand, 34961853 - 34961727
Alignment:
Q  110 gtttaactttatcaaagaattgatttaaaagacannnnnnnnnaaaaaa-tacggtaattcctttccttactgaaaataaaaacacaagtcagccaaatc 208  Q
    ||||||||||||| |||||||||| |||||||||         |||||| |||||||||||||||||||||  ||||||||| ||||||||||| |||||    
T  34961853 gtttaactttatcgaagaattgatgtaaaagacatttttaaaaaaaaaaatacggtaattcctttccttaccaaaaataaaa-cacaagtcagctaaatc 34961755  T
Q  209 agatgaattaaagatcgaattttctctg 236  Q
    ||||||| |||||| |||||||||||||    
T  34961754 agatgaactaaagaccgaattttctctg 34961727  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 34961962 - 34961908
Alignment:
Q  47 cactaagatacaaggatcaaacatcaaataggatttaaccatcaatgattaaaat 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34961962 cactaagatacaaggatcaaacatcaaataggatttaaccatcaatgattaaaat 34961908  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 22741289 - 22741318
Alignment:
Q  1 tataaggtgaattctagccactagactact 30  Q
    ||||||||||||||||||||||||||||||    
T  22741289 tataaggtgaattctagccactagactact 22741318  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 14967644 - 14967616
Alignment:
Q  1 tataaggtgaattctagccactagactac 29  Q
    |||||||||||||||||||||||||||||    
T  14967644 tataaggtgaattctagccactagactac 14967616  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 15397120 - 15397092
Alignment:
Q  1 tataaggtgaattctagccactagactac 29  Q
    |||||||||||||||||||||||||||||    
T  15397120 tataaggtgaattctagccactagactac 15397092  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 38451947 - 38451975
Alignment:
Q  1 tataaggtgaattctagccactagactac 29  Q
    |||||||||||||||||||||||||||||    
T  38451947 tataaggtgaattctagccactagactac 38451975  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 42887238 - 42887266
Alignment:
Q  1 tataaggtgaattctagccactagactac 29  Q
    |||||||||||||||||||||||||||||    
T  42887238 tataaggtgaattctagccactagactac 42887266  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 6530215 - 6530185
Alignment:
Q  1 tataaggtgaattctagccactagactactt 31  Q
    |||||||||||||||||||||||||||||||    
T  6530215 tataaggtgaattctagccactagactactt 6530185  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 12127920 - 12127892
Alignment:
Q  1 tataaggtgaattctagccactagactac 29  Q
    |||||||||||||||||||||||||||||    
T  12127920 tataaggtgaattctagccactagactac 12127892  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 35190847 - 35190875
Alignment:
Q  1 tataaggtgaattctagccactagactac 29  Q
    |||||||||||||||||||||||||||||    
T  35190847 tataaggtgaattctagccactagactac 35190875  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 11246500 - 11246470
Alignment:
Q  4 aaggtgaattctagccactagactacttaac 34  Q
    |||||||||||||||||||||||||||||||    
T  11246500 aaggtgaattctagccactagactacttaac 11246470  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 23925627 - 23925657
Alignment:
Q  1 tataaggtgaattctagccactagactactt 31  Q
    |||||||||||||||||||||||||||||||    
T  23925627 tataaggtgaattctagccactagactactt 23925657  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 5156981 - 5157009
Alignment:
Q  1 tataaggtgaattctagccactagactac 29  Q
    |||||||||||||||||||||||||||||    
T  5156981 tataaggtgaattctagccactagactac 5157009  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 9285670 - 9285640
Alignment:
Q  1 tataaggtgaattctagccactagactactt 31  Q
    |||||||||||||||||||||||||||||||    
T  9285670 tataaggtgaattctagccactagactactt 9285640  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 39992919 - 39992952
Alignment:
Q  1 tataaggtgaattctagccactagactacttaac 34  Q
    |||||||||||||||||||||||| |||||||||    
T  39992919 tataaggtgaattctagccactaggctacttaac 39992952  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 3465667 - 3465695
Alignment:
Q  1 tataaggtgaattctagccactagactac 29  Q
    |||||||||||||||||||||||||||||    
T  3465667 tataaggtgaattctagccactagactac 3465695  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 37739190 - 37739218
Alignment:
Q  1 tataaggtgaattctagccactagactac 29  Q
    |||||||||||||||||||||||||||||    
T  37739190 tataaggtgaattctagccactagactac 37739218  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 52560848 - 52560876
Alignment:
Q  1 tataaggtgaattctagccactagactac 29  Q
    |||||||||||||||||||||||||||||    
T  52560848 tataaggtgaattctagccactagactac 52560876  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 34620602 - 34620632
Alignment:
Q  1 tataaggtgaattctagccactagactactt 31  Q
    |||||||||||||||||||||||||||||||    
T  34620602 tataaggtgaattctagccactagactactt 34620632  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 29664687 - 29664715
Alignment:
Q  1 tataaggtgaattctagccactagactac 29  Q
    |||||||||||||||||||||||||||||    
T  29664687 tataaggtgaattctagccactagactac 29664715  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 37246449 - 37246477
Alignment:
Q  1 tataaggtgaattctagccactagactac 29  Q
    |||||||||||||||||||||||||||||    
T  37246449 tataaggtgaattctagccactagactac 37246477  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 41699461 - 41699489
Alignment:
Q  1 tataaggtgaattctagccactagactac 29  Q
    |||||||||||||||||||||||||||||    
T  41699461 tataaggtgaattctagccactagactac 41699489  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 33
Target Start/End: Complemental strand, 25408702 - 25408673
Alignment:
Q  4 aaggtgaattctagccactagactacttaa 33  Q
    ||||||||||||||||||||||||||||||    
T  25408702 aaggtgaattctagccactagactacttaa 25408673  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 4354807 - 4354775
Alignment:
Q  2 ataaggtgaattctagccactagactacttaac 34  Q
    |||||||||||||||||||||||||||| ||||    
T  4354807 ataaggtgaattctagccactagactacctaac 4354775  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 36359729 - 36359701
Alignment:
Q  1 tataaggtgaattctagccactagactac 29  Q
    |||||||||||||||||||||||||||||    
T  36359729 tataaggtgaattctagccactagactac 36359701  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 2393314 - 2393285
Alignment:
Q  1 tataaggtgaattctagccactagactact 30  Q
    ||||||||||||||||||||||||||||||    
T  2393314 tataaggtgaattctagccactagactact 2393285  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 13874845 - 13874817
Alignment:
Q  1 tataaggtgaattctagccactagactac 29  Q
    |||||||||||||||||||||||||||||    
T  13874845 tataaggtgaattctagccactagactac 13874817  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 49904 - 49932
Alignment:
Q  1 tataaggtgaattctagccactagactac 29  Q
    |||||||||||||||||||||||||||||    
T  49904 tataaggtgaattctagccactagactac 49932  T

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Target: scaffold0039 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 101915 - 101943
Alignment:
Q  1 tataaggtgaattctagccactagactac 29  Q
    |||||||||||||||||||||||||||||    
T  101915 tataaggtgaattctagccactagactac 101943  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 9527510 - 9527538
Alignment:
Q  1 tataaggtgaattctagccactagactac 29  Q
    |||||||||||||||||||||||||||||    
T  9527510 tataaggtgaattctagccactagactac 9527538  T

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