View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9705_low_29 (Length: 226)
Name: NF9705_low_29
Description: NF9705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9705_low_29 |
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| [»] chr3 (6 HSPs) |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 6558038 - 6557815
Alignment:
| Q |
2 |
gtaaacagaaataaaaaagatgggccataaagtcagaatatggtgtatgtcaatttgttgtagacaactttgaaacgtagtttcggaagacatttataaa |
101 |
Q |
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| T |
6558038 |
gtaaacagaa-taaaaaagatgggccataaagtcagattatggtgtatgtcaatttgttgcagacagctttgaaacatagtttcagaagacacttataaa |
6557940 |
T |
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| Q |
102 |
agtaagtgaaacatgtttcattataatgcttgaatacaaaccatgaacaaattggaatggatggaattcacacaatgtcggactcttccctcccacacat |
201 |
Q |
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| T |
6557939 |
agtaagtgaaacatgtttcattataatgcttgaatacaaaccatgaacaaattggaatggatggaattcacacaatgtcagactcttcccttccacacat |
6557840 |
T |
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| Q |
202 |
gatcatgaggctctatctcgaatcc |
226 |
Q |
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| T |
6557839 |
gatcatgaggctctatctcgaatcc |
6557815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 6526792 - 6526577
Alignment:
| Q |
2 |
gtaaacagaaataaaaaagatgggccataaagtcagaatatggtgtatgtcaatttgttgtagacaactttgaaacgtagtttcggaagacatttataaa |
101 |
Q |
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| T |
6526792 |
gtaaacagaa-taaaaaagatggctcataaagtcagaatatggtgtatgacaatttgttgcagaacactttgaaacatagttttagaagacctttataaa |
6526694 |
T |
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| Q |
102 |
agtaagtgaaacatgtttcattataatgcttgaatacaaaccatgaacaaattggaatggatggaattcacacaatgtcggactcttccct--cccacac |
199 |
Q |
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| T |
6526693 |
agtaagtgaaatatgtttcattataatgcttgaatacaaaccatgaacaaattggaatggatggaattcaaacaatgtcagcctcttcccttgcccacac |
6526594 |
T |
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| Q |
200 |
atgatcatgaggctcta |
216 |
Q |
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| T |
6526593 |
atgatcacgaggctcta |
6526577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 6848372 - 6848157
Alignment:
| Q |
2 |
gtaaacagaaataaaaaagatgggccataaagtcagaatatggtgtatgtcaatttgttgtagacaactttgaaacgtagtttcggaagacatttataaa |
101 |
Q |
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| T |
6848372 |
gtaaacagaa-taaaaaagatggctcataaagtcagaacatggtgtatgacaatttgttgcagaacactttgaaacatagtttcagaagacctttataaa |
6848274 |
T |
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| Q |
102 |
agtaagtgaaacatgtttcattataatgcttgaatacaaaccatgaacaaattggaatggatggaattcacacaatgtcggactcttccct--cccacac |
199 |
Q |
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| T |
6848273 |
agtaagtgaaatatatttcattataatgcttgaatacaaaccatgaacaaattggaatggatggaattcaaacaatgtcagcctcttcccttgcccgcac |
6848174 |
T |
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| Q |
200 |
atgatcatgaggctcta |
216 |
Q |
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| T |
6848173 |
atgatcacgaggctcta |
6848157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 6788826 - 6788652
Alignment:
| Q |
22 |
tgggccataaagtcagaatatggtgtatgtcaatttgttgtagacaactttgaaacgta----gtttcggaagacatttataaaagtaagtgaaacatgt |
117 |
Q |
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|||| |||||||| |||||||| |||||| |||||||| | |||| |||||||| || ||||| ||| | ||||||||||||||||||| |||| |
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| T |
6788826 |
tgggacataaagttagaatatgttgtatgaatatttgttgcatacaaatttgaaacatatatagtttcagaataactttataaaagtaagtgaaatatgt |
6788727 |
T |
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| Q |
118 |
ttcattataatgcttgaatacaaaccatgaacaaattggaatggatggaattcacacaatgtcggactcttccct |
192 |
Q |
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| T |
6788726 |
ttcattataatgcttgaatacaaaccatgaacaaatcgcaatggatgaaattcacacaatgtcagcctcttccct |
6788652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 52 - 217
Target Start/End: Complemental strand, 6549486 - 6549318
Alignment:
| Q |
52 |
caatttgttgtagacaactttgaaacgtagtttcgg-aagacatttataaaagtaagtgaaacatgtttcattataatgcttgaatacaaaccatgaaca |
150 |
Q |
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|||||||||| | | || |||||||| ||||||| | || || |||||||| |||| ||||| |||||| |||||||||||||||||||||||||| ||| |
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| T |
6549486 |
caatttgttgcaaataaatttgaaacatagtttcagtaaaacctttataaatgtaaatgaaatatgttttattataatgcttgaatacaaaccatgtaca |
6549387 |
T |
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| Q |
151 |
aattggaatggatggaattcacacaatgtcggactcttccct--cccacacatgatcatgaggctctat |
217 |
Q |
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| T |
6549386 |
aattggaatagatggaatccacacaatttcagcctcatcccttgcctccacatgatcacgaggctctat |
6549318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 8467998 - 8468044
Alignment:
| Q |
99 |
aaaagtaagtgaaacatgtttcattataatgcttgaatacaaaccat |
145 |
Q |
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| T |
8467998 |
aaaagttagtgaaacatgtttctttataatgcttgaatacaaaccat |
8468044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 11499 - 11284
Alignment:
| Q |
2 |
gtaaacagaaataaaaaagatgggccataaagtcagaatatggtgtatgtcaatttgttgtagacaactttgaaacgtagtttcggaagacatttataaa |
101 |
Q |
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|||||||||| ||| |||||||| |||||||||||||||||||||||| |||||||||| ||| |||||||||| ||||||| |||||| |||||||| |
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| T |
11499 |
gtaaacagaa-taataaagatggctcataaagtcagaatatggtgtatgacaatttgttgcagaacactttgaaacatagtttcagaagacctttataaa |
11401 |
T |
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| Q |
102 |
agtaagtgaaacatgtttcattataatgcttgaatacaaaccatgaacaaattggaatggatggaattcacacaatgtcggactcttccct--cccacac |
199 |
Q |
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| T |
11400 |
agtaagtgaaatatttttcattataatgcttgaatacaaaccatgaacaaattggaatggatggaattcaaacaatgtcagcctcttcccttgcccgcac |
11301 |
T |
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| Q |
200 |
atgatcatgaggctcta |
216 |
Q |
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||||||| ||||||||| |
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| T |
11300 |
atgatcacgaggctcta |
11284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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