View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9705_low_30 (Length: 225)
Name: NF9705_low_30
Description: NF9705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9705_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 6843080 - 6843294
Alignment:
| Q |
1 |
acagacgttctagactatgaaatcaccaaaataaacgaaagaaaggtgaaaatttatgaaaatcatttgtttaactaaaaagaaag-------------- |
86 |
Q |
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| T |
6843080 |
acagacgtgctagactatgaaatcacaaaaataaacgaaagaaaagtgaaaatttatgaaaatcatttgtttaactaaaaagaaagaatacaatttggag |
6843179 |
T |
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| Q |
87 |
gggtgatttcggggcaaaattaaccgctaaatcactccactttagtagatctagaagaaaagtagttgtgattgtgatggctagggtttgaaaaaaggaa |
186 |
Q |
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| T |
6843180 |
gggtgatttcagggtaaaattaaccgctaaatcactccactttagtagatctagaagaaaagtagttgtgattgtgatggctagggtttgaaaaaaggaa |
6843279 |
T |
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| Q |
187 |
gagagagacgtagtg |
201 |
Q |
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| T |
6843280 |
gagagagacgtagtg |
6843294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 19384441 - 19384384
Alignment:
| Q |
23 |
tcaccaaaataaacgaaagaaaggtgaaaatttatgaaaatcatttgtttaactaaaa |
80 |
Q |
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| T |
19384441 |
tcacaaaaataaacggaagaaagctgaaaatatgtgaaaattacttgtttaactaaaa |
19384384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 6646602 - 6646677
Alignment:
| Q |
11 |
tagactatgaaatcaccaaaataaacgaaagaaaggtgaaaatttatgaaaatcatttgtttaactaaaaagaaag |
86 |
Q |
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| T |
6646602 |
tagactaagaaatcacaaaatcaaacgaaagaaaactgaaaatatgtgaaaatcctttatttaactaaagagaaag |
6646677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 18573419 - 18573358
Alignment:
| Q |
20 |
aaatcaccaaaataaacgaaagaaaggtgaaaatttatgaaaatcatttgtttaactaaaaa |
81 |
Q |
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||||||| |||| ||| ||||||| ||||||| ||||||||||| ||||||||||||||| |
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| T |
18573419 |
aaatcacaaaaacaaaagaaagaagattgaaaatatatgaaaatcacttgtttaactaaaaa |
18573358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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