View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9705_low_32 (Length: 204)
Name: NF9705_low_32
Description: NF9705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9705_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 7e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 655744 - 655572
Alignment:
| Q |
18 |
aattttcacacacataatatatatatggaagacacaaattttggtaaagaaaaaatgaatatcaaattattatatataaaggtcttacagttttgagtaa |
117 |
Q |
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| T |
655744 |
aattttcacacacataatatatat--ggaagacacaaattttggtaaagaaaaaatgaatatcaaattattatatataaaggtcttacagttttgagtaa |
655647 |
T |
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| Q |
118 |
atgtgatatttgtttgtatttgattggacgtaaagtatcaaactcaaaacccaatttctcatgctccgtgcctat |
192 |
Q |
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| T |
655646 |
atgtgatatttgtttgtatttgattggacgtaaagtatcaaactcaaaacccaatttctcatgctccgtgcctat |
655572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 2691355 - 2691276
Alignment:
| Q |
113 |
agtaaatgtgatatttgtttgtatttgattggacgtaaagtatcaaactcaaaacccaatttctcatgctccgtgcctat |
192 |
Q |
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| T |
2691355 |
agtaaaggtgatatttgtttgtatttgattggacgtaaagtatcaaactcaaaaccaaacttctcatgttctgtgcctat |
2691276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 2673158 - 2673087
Alignment:
| Q |
121 |
tgatatttgtttgtatttgattggacgtaaagtatcaaactcaaaacccaatttctcatgctccgtgcctat |
192 |
Q |
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||||||||||| ||| || ||||||||||||||||||||||||||||| || |||||||| || |||||||| |
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| T |
2673158 |
tgatatttgttggtagtttattggacgtaaagtatcaaactcaaaaccaaacttctcatgttctgtgcctat |
2673087 |
T |
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