View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9705_low_5 (Length: 470)
Name: NF9705_low_5
Description: NF9705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9705_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 10 - 451
Target Start/End: Original strand, 32350644 - 32351102
Alignment:
| Q |
10 |
gatgaactggttcaatgatacgggttgggtttgttttggtctatggatttttgttgcagattttgcaattcgtgataattcttgtcgcacagattcaaag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32350644 |
gatgaactggttcaatgatacgggttgggtttgttttggtctatggatttttgttgcagattttgcaattcgtgataattcttgtcgcacagattcaaag |
32350743 |
T |
|
| Q |
110 |
gattttgccatgaaaataaacaaaagacaagat-------------gaaactggtttgttgttatctaagacagatattatcaaacatgtaggatgcaac |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32350744 |
gattttgccatgaaaataaacaaaagacaagatgaaatgagtagatgaaactggtttgttgttatctaagacagatattatcaaacatgtaggatgcaac |
32350843 |
T |
|
| Q |
197 |
tagatatattttgttacaattcgaggtgtatttcgcaagaacacattgttttttgtttgacaaggtaacacatatcgagctcgggcctagttgaaaattt |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32350844 |
tagatatattttgttacaattcgaggtgtatttcgcaagaacacattgttttttgtttgacaaggta--acatatcgagctcgggcctagttgaaaattt |
32350941 |
T |
|
| Q |
297 |
atgagaatggattggaggacctt------gtggacatggtttggttcacgaggaaaaccaaaccaaattgaaccggattcttttcaaaactcataataat |
390 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32350942 |
atgagaatggattggaggaccttgctagggtggacatggtttggttcacgaggaaaaccaaaccaaattgaaccggattcttttcaaaactcataataat |
32351041 |
T |
|
| Q |
391 |
tgaaatgaaccctttgcattttaatccggaccaaattgctatttataatggttcggatata |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32351042 |
tgaaatgaaccctttgcattttaatccggaccaaattgctattcataatggttcggatata |
32351102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University