View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9705_low_7 (Length: 383)
Name: NF9705_low_7
Description: NF9705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9705_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 655744 - 655403
Alignment:
| Q |
18 |
aattttcacacacataatatatatatggaagacacaaattttggtaaagaaaaaatgaatatcaaattattatatataaaggtcttacagttttgagtaa |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
655744 |
aattttcacacacataatatatat--ggaagacacaaattttggtaaagaaaaaatgaatatcaaattattatatataaaggtcttacagttttgagtaa |
655647 |
T |
|
| Q |
118 |
atgtgatatttgtttgtatttgattggacgtaaagtatcaaactcaaaacccaatttctcatgctccgtgcctattctgcaacgacacatacataaattt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
655646 |
atgtgatatttgtttgtatttgattggacgtaaagtatcaaactcaaaacccaatttctcatgctccgtgcctattctgcaacgacacatacataaattt |
655547 |
T |
|
| Q |
218 |
gacattaaataattagtcacaccaacaagttttaaaaagggatggtagcagtcattttaatcaccgaatatgtaataagtagtcacaatagtttgtcaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||| |||||| |
|
|
| T |
655546 |
gacattaaataattagtcacaccaacaagttttaaaaagggatggtagtagtcattttaatcaccgaatatataacgagtagtcacaatagttcgtcaat |
655447 |
T |
|
| Q |
318 |
gaatcaaaattctttttcttcttcttttggtacataaaagaggg |
361 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
655446 |
gcatcaaaattctttttcttcttcttttggtacataaaagaggg |
655403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 121 - 232
Target Start/End: Complemental strand, 2673158 - 2673047
Alignment:
| Q |
121 |
tgatatttgtttgtatttgattggacgtaaagtatcaaactcaaaacccaatttctcatgctccgtgcctattctgcaacgacacatacataaatttgac |
220 |
Q |
| |
|
||||||||||| ||| || ||||||||||||||||||||||||||||| || |||||||| || ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2673158 |
tgatatttgttggtagtttattggacgtaaagtatcaaactcaaaaccaaacttctcatgttctgtgcctattctgcaatcacacatacataaatttgac |
2673059 |
T |
|
| Q |
221 |
attaaataatta |
232 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2673058 |
attaaataatta |
2673047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 113 - 214
Target Start/End: Complemental strand, 2691355 - 2691254
Alignment:
| Q |
113 |
agtaaatgtgatatttgtttgtatttgattggacgtaaagtatcaaactcaaaacccaatttctcatgctccgtgcctattctgcaacgacacatacata |
212 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || ||||||||||||||| ||||||||||| |
|
|
| T |
2691355 |
agtaaaggtgatatttgtttgtatttgattggacgtaaagtatcaaactcaaaaccaaacttctcatgttctgtgcctattctgcaatcacacatacata |
2691256 |
T |
|
| Q |
213 |
aa |
214 |
Q |
| |
|
|| |
|
|
| T |
2691255 |
aa |
2691254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 8940221 - 8940177
Alignment:
| Q |
283 |
gaatatgtaataagtagtcacaatagtttgtcaatgaatcaaaat |
327 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
8940221 |
gaatgtgtaataagtagtcacaatagttcttcaatgcatcaaaat |
8940177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University