View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9705_low_9 (Length: 373)
Name: NF9705_low_9
Description: NF9705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9705_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 37 - 354
Target Start/End: Original strand, 36903902 - 36904218
Alignment:
| Q |
37 |
ttgcatgagttatagagtatttggcatcacatcacatacataccaagtaaacaaatgtgccatcagaaactttgtaaaagcaagatgaaatcagtttata |
136 |
Q |
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| T |
36903902 |
ttgcatgagttatagagtatttggcatcacatcacatacataccaagtaaacaaatgggccatcagaaactttgtgaaagcaagatgaaat-agtttata |
36904000 |
T |
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| Q |
137 |
caaacccatgataaaagaatatctacaaaatttcaaacgataaaacatcatatataaaaacaaacaaggcaatggaaataatagaagatcgtatactcat |
236 |
Q |
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| T |
36904001 |
caaacccatgataaaagaatatctacaaaatttcaaacgataaaacatcatatataaaaacaaacaaggcaatggaaataatagaagatcgtatactcat |
36904100 |
T |
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| Q |
237 |
ttagtaaaagaaaaagaaaacaagaacatatactgaaatataatggccttataaggcaaactaaagcgattgttctaataaattttgaagcaaaccatta |
336 |
Q |
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| T |
36904101 |
ttagtaaaagaaaaagaaaacaagaacatatactgaaatataacggccttataaggcaaactaaagcgattgttctaataaattttgaagcaaaccatta |
36904200 |
T |
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| Q |
337 |
tactaagaaccctaaaaa |
354 |
Q |
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| T |
36904201 |
tactaagaaccccaaaaa |
36904218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 36908397 - 36908459
Alignment:
| Q |
1 |
ttgaaattgaaccattcattttgcacaatctttgtcttgcatgagttatagagtatttggcat |
63 |
Q |
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| T |
36908397 |
ttgaaattgaaccattcattttgcacaatctctgtcttgcatgagttatagagtatttggcat |
36908459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 198 - 310
Target Start/End: Complemental strand, 37073847 - 37073736
Alignment:
| Q |
198 |
aaacaaggcaatggaaataatagaagatcgtatactcatttagtaaaagaaa-aagaaaacaagaacatatactgaaatataatggccttataaggcaaa |
296 |
Q |
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|||||| ||||||||||||||||||||| |||| ||||| |||||||||||| |||||| ||||||||| |||| |||||||||||||| |||||||| |
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| T |
37073847 |
aaacaaagcaatggaaataatagaagattgtatgctcatatagtaaaagaaagaagaaagcaagaacatctactcaaatataatggcct--taaggcaag |
37073750 |
T |
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| Q |
297 |
ctaaagcgattgtt |
310 |
Q |
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||||| |||||||| |
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| T |
37073749 |
ctaaatcgattgtt |
37073736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 36908462 - 36908517
Alignment:
| Q |
117 |
caagatgaaatcagtttatacaaacccatgataaaagaatatctacaaaatttcaa |
172 |
Q |
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| T |
36908462 |
caagaggaaatcagtttatacaaacccatgataaaagaatatctacaaaatttcaa |
36908517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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