View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9706_high_12 (Length: 417)
Name: NF9706_high_12
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_high_12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 110 - 417
Target Start/End: Complemental strand, 34041280 - 34040973
Alignment:
| Q |
110 |
tgcagaataacgatgtctctttaaaagtattattatggggtgaattctacttcattttttagtggattaacttgatgaatctataattggatggagggtt |
209 |
Q |
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| T |
34041280 |
tgcagaataacgatgtctgtttaaa-gtattattatggggtgaattctacttcattttttagtggatgaacttgatgaatttataattggatggagggtt |
34041182 |
T |
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| Q |
210 |
ggt-aattggatcaaattgttatctctatttcaatcaatagggtctgttttggactcgacctctctacagtttcaacacactgtaaaattaaagataaaa |
308 |
Q |
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| T |
34041181 |
ggttaattggatcaaattgttatctctatttcaatcaatagggtctgttttggactcgacctctctacagtttcaacacactgtaaaattaaagataaaa |
34041082 |
T |
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| Q |
309 |
ccatttaaccatcaggaaattaaatcatttacaaactaaaacatgcatcagaaagactaaagcaattgatcaaggtggatgagcttcacaatcatgaata |
408 |
Q |
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| T |
34041081 |
ccatttaaccatcaggaaattaaatcatttacaaaccaaaacatgcatcagaaagactaaagcaattgatcaaggtggatgagcttcacaatcatgaata |
34040982 |
T |
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| Q |
409 |
cttgccaac |
417 |
Q |
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| T |
34040981 |
cttgccaac |
34040973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 34042106 - 34042005
Alignment:
| Q |
1 |
ttgcaatatactaataataggtcacagtcacagcttttgccatttaaaatcagtcaacagacataatagacctcaaaaatcttgactatcaattgtagtt |
100 |
Q |
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| T |
34042106 |
ttgcaatatactaataataggtcacagtcacagcttttgccatttaaaatcagtcaacagacataatagacctcaaaaatcttgactatcaattgtagtt |
34042007 |
T |
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| Q |
101 |
tt |
102 |
Q |
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|| |
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| T |
34042006 |
tt |
34042005 |
T |
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