View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9706_high_13 (Length: 417)
Name: NF9706_high_13
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 14 - 401
Target Start/End: Complemental strand, 46908856 - 46908465
Alignment:
| Q |
14 |
ggacatcagatggctctcaagtcattttcgtattaggttctgcatataataattattctcagatgga----gggttgtgctattttcagtgtttcttaga |
109 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
46908856 |
ggacatcgaatggctctcaagtcattttcgtattaggttctgcatataataattattctcagatggatggagggatgtgctattttcagtgtttcttaga |
46908757 |
T |
|
| Q |
110 |
tatagtaggatgacacaaactttgaaacactacatcatttgctaataatgataaagctggaaaatgttagagacttgagaatgtaatgagcaactatcaa |
209 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46908756 |
tatagcaggatgacacaaactttgaaatactacatcatttgctaataatgataaagctggaaaatgttagagacttgagaatgtaatgagcaactatcaa |
46908657 |
T |
|
| Q |
210 |
ctttcttccacaacagaagatgcgtccatttttacataaacgttatatcccactgaacaagcaagtaaattgcatgacctacaattttcccgataagata |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46908656 |
ctttcttccacaacagaagatgcgtccatttttacataaacgttatatcccactgaacaagcaagtaaattgcatgacctacaattttcccgataagata |
46908557 |
T |
|
| Q |
310 |
ggtagtataagagtgaattactaccctaaaaatatgctgctaagatgagaataagattaatcagttacatggttgacacagcaacaaaatgt |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46908556 |
ggtagtataagagtgaattactaccctaaaaatatgctgctaagatgagaataagattaatcagttacatggttgacacagcaacaaaatgt |
46908465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University