View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9706_high_18 (Length: 365)
Name: NF9706_high_18
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 4118082 - 4117819
Alignment:
| Q |
19 |
aatattatattcagatctcccaactaatccccccaaaacttatgtaattacctagatgcatttaatgatgattttgaaatttcaaatctcccaactacta |
118 |
Q |
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| T |
4118082 |
aatattatattcagatctcccaactaatccccccaaaacttatgtaattacctagatgcatttaatgatgattttgaaatt-caaatctcccaactact- |
4117985 |
T |
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| Q |
119 |
cttcatctatattcagttctggcatgtttccaaagcattagggttccaatgaaatgtgttattactatctataaattacattattcccttgctcttgctt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4117984 |
--tcatctatattcagttctggcatgtttccaaagcattagggttccaatgaaatgtgttattactatctataaattacattattcccttgctcttgctt |
4117887 |
T |
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| Q |
219 |
gcctcattcatcacccctgcgaagtgatggctcaccacagcatccagtatcctaccattgtttaactg |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4117886 |
gcctcattcatcacccctgcgaagtgatggctcaccacagcatccagtatcctaccattgtttaactg |
4117819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 21157387 - 21157121
Alignment:
| Q |
19 |
aatattatattcagatctcccaactaatccccccaaaacttatgtaattacctagatgcatttaatgatgattttgaaatttcaaatctcccaactacta |
118 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21157387 |
aatataatattcagatctcccaactaatccccccaaaacttatgtaattacctagatgcatttaatgatgattttgaaatt-caaatctcccaactact- |
21157290 |
T |
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| Q |
119 |
cttcatctatattcagttctggcatgtttccaaagcattagggttccaatgaaatgtgttattactatctataaattacattattcccttgctcttgctt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21157289 |
--tcatctatattcagttctggcatgtttccaaagcattagggttccaatgaaatgtgttattactatctataaattacattattcccttgctcttgctt |
21157192 |
T |
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| Q |
219 |
gcctcattcatcacccctgcgaagtgatggctcaccacagcatccagtatcctaccattgtttaactggta |
289 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21157191 |
gcctcattcatcacccctgtgaagtgatggctcatcacagcatccagtatcctaccattgtttaactggta |
21157121 |
T |
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