View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9706_high_23 (Length: 309)
Name: NF9706_high_23
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_high_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 34040721 - 34040996
Alignment:
| Q |
1 |
tcaataaatgcaaaataataacactaattttttattttatgattgcgtttacgttttcatattttaataataagaaaatactagtaaataattgttatgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34040721 |
tcaataaatgcaaaataataacactaatttttt-ttttatgattgcgtttacgttttcatattttaataa---gaaaatactagtaaataattgtta--- |
34040813 |
T |
|
| Q |
101 |
tagattaataatttctccttcatcaaatttaaattcggattctccaactcgatcttaactcaaaccaaccaagctatccaaccttttttcatttgatact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34040814 |
--gattaataatttctccttcatcaaatttaaattcggattctccaactc----ttaactcaaaccaaccaagctatccaaccttttttcatttgatact |
34040907 |
T |
|
| Q |
201 |
actttgtagtaggagggctattatgagaatatattataagaggagaaagcattctcccttttaatgttggcaagtattcatgattgtga |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34040908 |
actttgtagtaggagggctattatgagaatatattataagaggagaaagcattctcccttttgatgttggcaagtattcatgattgtga |
34040996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University