View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9706_high_30 (Length: 280)
Name: NF9706_high_30
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 25277407 - 25277164
Alignment:
| Q |
19 |
gataagatgcttacacctacctttccctttgtcaagtagtcattgtatattcgagataataaaagtcggcataaaagaaatggtaacacttcttctagca |
118 |
Q |
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| T |
25277407 |
gataagatgcttacacctacctttccctttgtcaagtagccattgtatattcgagataataaaagtcggaaaaaaagaaatggtaacacttcttctagca |
25277308 |
T |
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| Q |
119 |
gggttaacatttcagatggtgtgaacaatgacaataatatgttcctaaatggaaactatcaatattgtgcaactgctcttatgcaaatatctgtttatga |
218 |
Q |
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| T |
25277307 |
gggttaacatttcatatggtgtgaacaatgacaataatatgttcctaaatggaaactatcaatattgtgcagctgctcctatgcaaatatctgtttatga |
25277208 |
T |
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| Q |
219 |
aaatgttgaaaaaggagaaaatcctacagagtctgacatctctg |
262 |
Q |
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| T |
25277207 |
aaatgttgaaaaaggaaaaaattctactgagtctgatatctctg |
25277164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 25262137 - 25262230
Alignment:
| Q |
19 |
gataagatgcttacacctacctttccctttgtcaagtagtcattgtatattcgagataataaaagtcggcataaaagaaatggtaacacttctt |
112 |
Q |
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|||||| || |||| ||||||||||||||| |||| | ||||| | ||||| ||||||||| |||| ||| |||||||||||||||| ||||| |
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| T |
25262137 |
gataagttgtttactcctacctttccctttatcaataaatcattatttattcaagataataagagtcagcaaaaaagaaatggtaacaattctt |
25262230 |
T |
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