View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9706_high_35 (Length: 246)

Name: NF9706_high_35
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9706_high_35
NF9706_high_35
[»] chr3 (3 HSPs)
chr3 (18-240)||(10878504-10878726)
chr3 (29-91)||(15332014-15332076)
chr3 (18-89)||(10917628-10917698)
[»] chr8 (2 HSPs)
chr8 (21-227)||(18565192-18565395)
chr8 (128-198)||(5825124-5825193)
[»] chr6 (3 HSPs)
chr6 (21-225)||(34659189-34659392)
chr6 (25-186)||(17206201-17206355)
chr6 (39-106)||(19122481-19122548)
[»] chr5 (3 HSPs)
chr5 (128-227)||(12063426-12063528)
chr5 (30-226)||(18303591-18303784)
chr5 (128-221)||(12046483-12046574)
[»] chr1 (4 HSPs)
chr1 (129-192)||(9757307-9757370)
chr1 (182-227)||(12440083-12440127)
chr1 (21-104)||(9757198-9757278)
chr1 (182-226)||(24286231-24286274)
[»] chr4 (2 HSPs)
chr4 (154-227)||(18777480-18777553)
chr4 (155-227)||(8910877-8910946)
[»] chr7 (5 HSPs)
chr7 (24-106)||(19143510-19143592)
chr7 (24-106)||(20742909-20742991)
chr7 (128-221)||(10984194-10984289)
chr7 (154-195)||(19843294-19843334)
chr7 (132-227)||(20052574-20052668)
[»] scaffold0004 (1 HSPs)
scaffold0004 (158-225)||(382010-382074)
[»] chr2 (3 HSPs)
chr2 (128-227)||(24216868-24216964)
chr2 (21-91)||(26655368-26655438)
chr2 (29-73)||(16158029-16158073)
[»] scaffold0711 (1 HSPs)
scaffold0711 (29-91)||(2339-2401)
[»] scaffold0041 (1 HSPs)
scaffold0041 (158-232)||(25772-25841)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 10878504 - 10878726
Alignment:
Q  18 caagggactgaactactcatgtgttatgggaggaaagagtataaaatttctttgtgtatgctttctctctctctgactctttatctttgagttccgtttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10878504 caagggactgaactactcatgtgttatgggaggaaagagtataaaatttctttgtgtatgctttctctctctctgactctttatctttgagttccgtttt 10878603  T
Q  118 ctactgcatacattcagactccgagtcagaatctataacatcagattctgaccaggtttttataaacactcagaaaaagaaaccgtcaaaaagccaacac 217  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10878604 ctactgcatgcattcagactccgagtcagaatctataacatcagattctgaccaggtttttataaacactcagaaaaagaaaccgtcaaaaagccaacac 10878703  T
Q  218 aattcaacccttcttattgtatt 240  Q
    |||||||||||||||||||||||    
T  10878704 aattcaacccttcttattgtatt 10878726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 15332014 - 15332076
Alignment:
Q  29 actactcatgtgttatgggaggaaagagtataaaatttctttgtgtatgctttctctctctct 91  Q
    |||| ||||||||| |||||||||  ||||||||||| |||| ||| ||||||||||||||||    
T  15332014 actaatcatgtgttgtgggaggaaccagtataaaattgctttttgtctgctttctctctctct 15332076  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 10917698 - 10917628
Alignment:
Q  18 caagggactgaactactcatgtgttatgggaggaaagagtataaaatttctttgtgtatgctttctctctct 89  Q
    |||||||||| ||||||| |||||| |||||||||  |||||||||||| ||||||| |||| | |||||||    
T  10917698 caagggactggactactcctgtgttgtgggaggaactagtataaaattt-tttgtgtctgctctttctctct 10917628  T

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Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 18565395 - 18565192
Alignment:
Q  21 gggactgaactactcatgtgttatgggaggaaagagtataaaatttctttgtgtatgctttctctctctctgactctttatctttgagttccgttttcta 120  Q
    ||||||| ||||||| |||||| |||||||||  ||||||||||| |||||||| || |||||||||||| ||||||||||||| |  ||  ||| ||      
T  18565395 gggactggactactcttgtgttgtgggaggaactagtataaaattgctttgtgtctgttttctctctctcggactctttatcttggttttatgttatccg 18565296  T
Q  121 ctgcatacattcagactccgagtcagaatctataacatcagattctgaccaggtttttataaacactcagaaaaagaaaccgtcaaaaa-gccaacacaa 219  Q
    ||||||    ||| |||| ||||||||||||  |||||||||||||||| ||||||| || |||||| ||||||||||| ||||||||| ||||||||||    
T  18565295 ctgcat----tcaaactctgagtcagaatctgcaacatcagattctgactaggttttaatgaacacttagaaaaagaaatcgtcaaaaaggccaacacaa 18565200  T
Q  220 ttcaaccc 227  Q
    ||||||||    
T  18565199 ttcaaccc 18565192  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 5825193 - 5825124
Alignment:
Q  128 cattcagactccgagtcagaatctataacatcagattctgaccaggtttttataaacactcagaaaaagaa 198  Q
    ||||||||||| ||||||||||||  ||||||||||  |||||||| ||||||||||||| ||| ||||||    
T  5825193 cattcagactctgagtcagaatctgcaacatcagatgttgaccagg-ttttataaacacttagataaagaa 5825124  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 34659392 - 34659189
Alignment:
Q  21 gggactgaactactcatgtgttatgggaggaaagagtataaaattt-ctttgtgtatgctttctctctctctgactctttatctttgagttccgttt-tc 118  Q
    ||||||| ||||||| |||||| |||||||||  |||||||||  | |||||||| |||||||  |||||||||||||||| ||||| ||||   || ||    
T  34659392 gggactggactactcttgtgttgtgggaggaaccagtataaaaactactttgtgtctgctttccttctctctgactctttaactttgtgttctaattatc 34659293  T
Q  119 tactgcatacattcagactccgagtcagaatctataacatcagattctgaccaggtttttataaacactca-gaaaaagaaaccgtcaaaaagccaacac 217  Q
     |||||||    |||||||| |||| |||||||  ||||  |||||||||||||||| |||| |||||  | |||||||||||| ||| |||||||||||    
T  34659292 cactgcat----tcagactctgagttagaatctgcaacaagagattctgaccaggttattattaacaccaaagaaaaagaaaccttcataaagccaacac 34659197  T
Q  218 aattcaac 225  Q
    ||||||||    
T  34659196 aattcaac 34659189  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 17206355 - 17206201
Alignment:
Q  25 ctgaactactcatgtgttatgggaggaaagagtataaaatttctttgtgtatgctttctctctctctgactctttatctttgagttccgttttctactgc 124  Q
    ||||||||||| | | || |||||||||  ||||||||||| |  ||||| |||||  ||||||||| ||||||||| |||| |||  ||||||  |||     
T  17206355 ctgaactactcctatattgtgggaggaactagtataaaattac--tgtgtctgctt--tctctctctaactctttatttttgtgttatgttttccgctg- 17206261  T
Q  125 atacattcagactccgagtcagaatctataacatcagattctgaccaggt-ttttataaacac 186  Q
       ||||||||||| ||||||||||||| |||||| ||||||||| || | ||||||||||||    
T  17206260 ---cattcagactctgagtcagaatctacaacatccgattctgactagatattttataaacac 17206201  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 19122548 - 19122481
Alignment:
Q  39 tgttatgggaggaaagagtataaaatttctttgtgtatgctttctctctctctgactctttatctttg 106  Q
    |||| |||||||||  ||||||||| | |||||||| |||||||||||||| || |||||||||||||    
T  19122548 tgttgtgggaggaactagtataaaagtgctttgtgtctgctttctctctctgtgtctctttatctttg 19122481  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 12063426 - 12063528
Alignment:
Q  128 cattcagactccgagtcagaatctataacatcagattctgaccaggtttttataaacactcagaaaaagaaaccgtcaaaaa---gccaacacaattcaa 224  Q
    ||||||||||| || |||||||| | |||||||||||||  ||||||| |||| |||||| ||||||||||| |||||||||   |||||||||||||||    
T  12063426 cattcagactctgaatcagaatccacaacatcagattctatccaggttgttattaacactaagaaaaagaaaacgtcaaaaagacgccaacacaattcaa 12063525  T
Q  225 ccc 227  Q
    |||    
T  12063526 ccc 12063528  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 18303784 - 18303591
Alignment:
Q  30 ctactcatgtgttatgggaggaaagagtataaaatttctttgtgtatgctttctctctctctgactctttatctttgagttccgt-tttctactgcatac 128  Q
    |||||||||||||||||||||||  | |||||| || |||| ||||||  |||||||| ||| |||||||||||||| |||  || ||||   |||||      
T  18303784 ctactcatgtgttatgggaggaaccaatataaa-ttgctttatgtatgtcttctctctatcttactctttatctttgtgttatgtatttccgttgcat-- 18303688  T
Q  129 attcagactccgagtcagaatctataacatcagattctgaccaggtttttataaacactcagaaaaagaaaccgtcaaaaa-gccaacacaattcaacc 226  Q
      |||||||| ||||| ||||||  ||||||| ||| ||  |||||| |||| |||||| ||||||||||| ||||||||| |||||||||||| ||||    
T  18303687 --tcagactctgagtcggaatctgcaacatcaaattttgtacaggttgttattaacacttagaaaaagaaaacgtcaaaaaggccaacacaatttaacc 18303591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 12046574 - 12046483
Alignment:
Q  128 cattcagactccgagtcagaatctata-acatcagattctgaccaggtttttataaacactcagaaaaagaaaccgtcaaaaagccaacacaatt 221  Q
    ||||||||||| ||||||||||||  | || |||| || ||||||||||||  |||||||||||||||| ||||  | |||||||||||||||||    
T  12046574 cattcagactctgagtcagaatctgcatacgtcaggttatgaccaggtttt--taaacactcagaaaaataaactat-aaaaagccaacacaatt 12046483  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 9757307 - 9757370
Alignment:
Q  129 attcagactccgagtcagaatctataacatcagattctgaccaggtttttataaacactcagaa 192  Q
    |||||||||| |||||||||||| |||||||||||||||||||  |||||||||||||| ||||    
T  9757307 attcagactctgagtcagaatctgtaacatcagattctgaccaaatttttataaacacttagaa 9757370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 12440083 - 12440127
Alignment:
Q  182 aacactcagaaaaagaaaccgtcaaaaagccaacacaattcaaccc 227  Q
    |||||| |||||||||||||  ||||||||||||||||||||||||    
T  12440083 aacactaagaaaaagaaacca-caaaaagccaacacaattcaaccc 12440127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 9757198 - 9757278
Alignment:
Q  21 gggactgaactactcatgtgttatgggaggaaagagtataaaatttctttgtgtatgctttctctctctctgactctttatctt 104  Q
    ||||||| |||||||||||||| |||||||||  ||| | ||||| |||||| ||||  |  ||||||||||||||||||||||    
T  9757198 gggactggactactcatgtgttgtgggaggaaccagtgt-aaattgctttgtctatg--tcttctctctctgactctttatctt 9757278  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 24286231 - 24286274
Alignment:
Q  182 aacactcagaaaaagaaaccgtcaaaaagccaacacaattcaacc 226  Q
    |||||| |||||||||||||| ||| |||||||||||||||||||    
T  24286231 aacacttagaaaaagaaaccg-caagaagccaacacaattcaacc 24286274  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 18777480 - 18777553
Alignment:
Q  154 aacatcagattctgaccaggtttttataaacactcagaaaaagaaaccgtcaaaaagccaacacaattcaaccc 227  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||   |||||||  || ||||||||||||||    
T  18777480 aacatcagattctgaccaagtttttataaacacttagaaaaagaatttgtcaaaagacccacacaattcaaccc 18777553  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 8910946 - 8910877
Alignment:
Q  155 acatcagattctgaccaggtttttataaacactcagaaaaagaaaccgtcaaaaagccaacacaattcaaccc 227  Q
    |||||||||| |||||||||||||   |||| ||||||||||||||| | |||||||||||||||||||||||    
T  8910946 acatcagattttgaccaggtttttc--aacattcagaaaaagaaaccat-aaaaagccaacacaattcaaccc 8910877  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 19143510 - 19143592
Alignment:
Q  24 actgaactactcatgtgttatgggaggaaagagtataaaatttctttgtgtatgctttctctctctctgactctttatctttg 106  Q
    |||||||||||| |||||| |||||||||   |||||||||| || ||||| | |||||||||||| || |||||||||||||    
T  19143510 actgaactactcttgtgttgtgggaggaacctgtataaaattgctctgtgtcttctttctctctctttgtctctttatctttg 19143592  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 20742909 - 20742991
Alignment:
Q  24 actgaactactcatgtgttatgggaggaaagagtataaaatttctttgtgtatgctttctctctctctgactctttatctttg 106  Q
    |||||||||||| |||||| |||||||||   |||||||||| || ||||| | |||||||||||| || |||||||||||||    
T  20742909 actgaactactcttgtgttgtgggaggaacctgtataaaattgctctgtgtcttctttctctctctttgtctctttatctttg 20742991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 10984194 - 10984289
Alignment:
Q  128 cattcagactccgagtcagaatctataacatcagattctgaccaggttt-ttataaacactcagaaaaagaaaccgtcaaaaag-ccaacacaatt 221  Q
    ||||||||||  |||| |||||||  |||||||||||||| |||  ||| || |||||||| ||||||||||| |||||||||| |||||||||||    
T  10984194 cattcagacttagagtaagaatctgcaacatcagattctgtccaaatttattttaaacacttagaaaaagaaatcgtcaaaaagaccaacacaatt 10984289  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 19843294 - 19843334
Alignment:
Q  154 aacatcagattctgaccaggtttttataaacactcagaaaaa 195  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  19843294 aacatcagattctgaccagg-ttttataaacactcagaaaaa 19843334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 20052668 - 20052574
Alignment:
Q  132 cagactccgagtcagaatctataacatcagattctgaccaggttttta-taaacactcagaaaaagaaaccgtcaaaaagccaacacaattcaaccc 227  Q
    ||||||| ||||||||||||  |||||||||||||| ||| |  | || ||||| || |||||||||||||||||||||| |  |||||||||||||    
T  20052668 cagactctgagtcagaatctgcaacatcagattctgtccaagactgtattaaacgcttagaaaaagaaaccgtcaaaaaggc--cacaattcaaccc 20052574  T

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Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 382074 - 382010
Alignment:
Q  158 tcagattctgaccaggtttttataaacactcagaaaaagaaaccgtcaaaaagccaacacaattcaac 225  Q
    |||||||||||||| |||||||  ||||||||||||||||||| | |||||| |||||||||||||||    
T  382074 tcagattctgaccaagttttta--aacactcagaaaaagaaactg-caaaaaaccaacacaattcaac 382010  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 24216868 - 24216964
Alignment:
Q  128 cattcagactccgagtcagaatct--ataacatcagattctgaccaggtttttataaacactcagaaaaagaaaccgtcaaaaagccaacacaattcaac 225  Q
    ||||||||||| ||||||||||||  ||  | ||||||||||||||| | ||| ||| ||||||||||||||||||   |||||||||||||||||||||    
T  24216868 cattcagactctgagtcagaatctgcatttc-tcagattctgaccagttctttttaa-cactcagaaaaagaaacc---aaaaagccaacacaattcaac 24216962  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 26655368 - 26655438
Alignment:
Q  21 gggactgaactactcatgtgttatgggaggaaagagtataaaatttctttgtgtatgctttctctctctct 91  Q
    ||||||| || |||| |||||| |||||||||  ||||||||||| |||||||| | || |||||||||||    
T  26655368 gggactggaccactcctgtgttgtgggaggaaccagtataaaattgctttgtgtctcctctctctctctct 26655438  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 16158029 - 16158073
Alignment:
Q  29 actactcatgtgttatgggaggaaagagtataaaatttctttgtg 73  Q
    |||||||||||||| |||||||||  ||||||||||| |||||||    
T  16158029 actactcatgtgttgtgggaggaactagtataaaattgctttgtg 16158073  T

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Target: scaffold0711 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 2339 - 2401
Alignment:
Q  29 actactcatgtgttatgggaggaaagagtataaaatttctttgtgtatgctttctctctctct 91  Q
    ||||||||| |||| |||||||||  |||||||||||||||| ||| |||| |||||||||||    
T  2339 actactcatatgttctgggaggaaccagtataaaatttctttttgtctgctctctctctctct 2401  T

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Target: scaffold0041 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 25841 - 25772
Alignment:
Q  158 tcagattctgaccaggtttttataaacactcagaaaaagaaaccgtcaaaaagccaacacaattcaacccttctt 232  Q
    |||| |||||||||||||||    |||||| ||||||||||| || |||||| ||||||||||||||||| ||||    
T  25841 tcaggttctgaccaggtttt----aacacttagaaaaagaaatcg-caaaaaaccaacacaattcaacccctctt 25772  T

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