View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9706_high_36 (Length: 240)
Name: NF9706_high_36
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8737735 - 8737955
Alignment:
| Q |
1 |
ctctttgtgcgtaatggtacccaacatatcattgagagagtgtgtataccagcgtactacctcactcctctctaccaaagaccttgaataagtgtttaga |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8737735 |
ctctttgtgcacaatggtacccaacatatcattgaga--gtgtgtataccagcgtactacctcactcctctctaccaaagaccttgaataattgtttaga |
8737832 |
T |
|
| Q |
101 |
aaattttgtgcaagggcatgctgaatattctccaaaagtttaacggttgtttattctaaaagaatcaattatcaataggattgtctgcatgattctgttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8737833 |
aaattttgtgcaagggcatgctgaatattctccaaaagtttaacggttgtttattctaaaagaatcaattatcaatgggattgtctgcatgattctgttc |
8737932 |
T |
|
| Q |
201 |
atcaaacttttgggtatctgaag |
223 |
Q |
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|||||||| |||||||| ||||| |
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| T |
8737933 |
atcaaactcttgggtatttgaag |
8737955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9089973 - 9090193
Alignment:
| Q |
1 |
ctctttgtgcgtaatggtacccaacatatcattgagagagtgtgtataccagcgtactacctcactcctctctaccaaagaccttgaataagtgtttaga |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9089973 |
ctctttgtgcacaatggtacccaacatatcattgaga--gtgtgtataccagcgtactacctcactcctctctaccaaagaccttgaataattgtttaga |
9090070 |
T |
|
| Q |
101 |
aaattttgtgcaagggcatgctgaatattctccaaaagtttaacggttgtttattctaaaagaatcaattatcaataggattgtctgcatgattctgttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9090071 |
aaattttgtgcaagggcatgctgaatattctccaaaagtttaacggttgtttattctaaaagaatcaattatcaatgggattgtctgcatgattctgttc |
9090170 |
T |
|
| Q |
201 |
atcaaacttttgggtatctgaag |
223 |
Q |
| |
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|||||||| |||||||| ||||| |
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| T |
9090171 |
atcaaactcttgggtatttgaag |
9090193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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