View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9706_high_37 (Length: 240)

Name: NF9706_high_37
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9706_high_37
NF9706_high_37
[»] chr6 (7 HSPs)
chr6 (17-240)||(21150391-21150614)
chr6 (98-221)||(33714103-33714226)
chr6 (137-240)||(23897148-23897251)
chr6 (21-84)||(33706469-33706532)
chr6 (36-84)||(21173954-21174002)
chr6 (32-81)||(21280220-21280268)
chr6 (21-57)||(33711917-33711953)
[»] scaffold0016 (2 HSPs)
scaffold0016 (17-84)||(65080-65147)
scaffold0016 (173-228)||(64918-64973)
[»] scaffold0510 (1 HSPs)
scaffold0510 (137-240)||(789-892)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 21150391 - 21150614
Alignment:
Q  17 agtattgtctatggcattggattcactttaatcaagccattgcaccattcatcatttttcagttgtgatatgatatcaaaaaagcttgaattttagcttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21150391 agtattgtctatggcattggattcactttaatcaagccattgcaccattcatcatttttcagttgtgatatgatatcaaaaaagcttgaattttagcttc 21150490  T
Q  117 acaaaattcacgttcataccaaatcaggacacgagaaatgtgaggcagacgcaaatccaaatactcactagaacatgttcaatcaacaactaataagggt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21150491 acaaaattcacgttcataccaaatcaggacacgagaaatgtgaggcagatgcaaatccaaatactcactagaacatgttcaatcaacaactaataagggt 21150590  T
Q  217 gagttgatttttggttatgggact 240  Q
    ||||||||||||||||||||||||    
T  21150591 gagttgatttttggttatgggact 21150614  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 33714103 - 33714226
Alignment:
Q  98 aagcttgaattttagcttcacaaaattcacgttcataccaaatcaggacacgagaaatgtgaggcagacgcaaatccaaatactcactagaacatgttca 197  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||| |||||||||||||| | ||||||||||    
T  33714103 aagcttgaattatagcttcacaaaattcacgttcatagcaaatcattacacgagaaatgtgaggcagacgcatatccaaatactcaccaaaacatgttca 33714202  T
Q  198 atcaacaactaataagggtgagtt 221  Q
    ||| || |||||||||||||||||    
T  33714203 atctaccactaataagggtgagtt 33714226  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 240
Target Start/End: Original strand, 23897148 - 23897251
Alignment:
Q  137 aaatcaggacacgagaaatgtgaggcagacgcaaatccaaatactcactagaacatgttcaatcaacaactaataagggtgagttgatttttggttatgg 236  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||   |  ||||||||||||| || |||||||| |||||||| ||| |||||||||     
T  23897148 aaatcgggacacgagaaatgtgagacagacgcaaatccaaatacttcttgaaacatgttcaatctaccactaataatggtgagtttattcttggttatga 23897247  T
Q  237 gact 240  Q
    ||||    
T  23897248 gact 23897251  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 33706469 - 33706532
Alignment:
Q  21 ttgtctatggcattggattcactttaatcaagccattgcaccattcatcatttttcagttgtga 84  Q
    |||| ||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  33706469 ttgtttatggaaatggattcaatttaatcaagccattgcaccattcatcctttttcagttgtga 33706532  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 21173954 - 21174002
Alignment:
Q  36 gattcactttaatcaagccattgcaccattcatcatttttcagttgtga 84  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||    
T  21173954 gattcactttaatcaagccattgcaccattcaacctttttcagttgtga 21174002  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 21280220 - 21280268
Alignment:
Q  32 attggattcactttaatcaagccattgcaccattcatcatttttcagttg 81  Q
    |||| ||| |||||| |||||||||||||||||||||| |||||||||||    
T  21280220 attgtatttactttattcaagccattgcaccattcatc-tttttcagttg 21280268  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 33711917 - 33711953
Alignment:
Q  21 ttgtctatggcattggattcactttaatcaagccatt 57  Q
    |||| |||||||||||||||||||||||| |||||||    
T  33711917 ttgtttatggcattggattcactttaatctagccatt 33711953  T

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Target: scaffold0016 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 65147 - 65080
Alignment:
Q  17 agtattgtctatggcattggattcactttaatcaagccattgcaccattcatcatttttcagttgtga 84  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  65147 agtattgtttatggcattggattcagtttaatcaagccattgcaccattcatcatttttcggttgtga 65080  T

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Target: scaffold0016; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 64973 - 64918
Alignment:
Q  173 ccaaatactcactagaacatgttcaatcaacaactaataagggtgagttgattttt 228  Q
    |||||||||||||| ||||||||| ||| || ||||||||||||||||| ||||||    
T  64973 ccaaatactcactaaaacatgttctatctaccactaataagggtgagtttattttt 64918  T

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Target: scaffold0510 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 892 - 789
Alignment:
Q  137 aaatcaggacacgagaaatgtgaggcagacgcaaatccaaatactcactagaacatgttcaatcaacaactaataagggtgagttgatttttggttatgg 236  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||   |  ||||||||||||| || |||||||| |||||||| ||| |||||||||     
T  892 aaatcgggacacgagaaatgtgagacagacgcaaatccaaatacttcttgaaacatgttcaatctaccactaataatggtgagtttattcttggttatga 793  T
Q  237 gact 240  Q
    ||||    
T  792 gact 789  T

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