View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9706_high_38 (Length: 239)
Name: NF9706_high_38
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_high_38 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 45404418 - 45404225
Alignment:
| Q |
1 |
attactacctcaacatttgtcttaatatttatgtgtttcaaatagcgccgtaagcaacaataaactaatgaccattaagagttttacatatttcaattac |
100 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45404418 |
attattacctcaacatttatcttaatatttatgtgtttcaaagagcgccgtaagcaacaataaactaatgaccattaagagttttacatacttcaattac |
45404319 |
T |
|
| Q |
101 |
atcagaagttttaaaatgttaggtttgaatcgtcgtttttatatatcatacatttagctcatttctaatctatgtttgactaccacttatactt |
194 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45404318 |
atcagaagttttaaagtgttgggtttgaatcgtcgcttttatatatcatacatttagctcatttctaatctatgtttgactaccacttatactt |
45404225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University