View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9706_high_41 (Length: 220)

Name: NF9706_high_41

Description: NF9706

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9706_high_41

[»] chr8 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 163; E-Value: 3e-87

Query Start/End: Original strand, 40 - 202

Target Start/End: Original strand, 39492442 - 39492604

Alignment:

Q	40	tatacgacgcgaatgcaaggagcattagagttaccacctggcttcagatttcaccctactgatgatgagcttgtgaatcactacttgtgtagaaagtgtg	139	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39492442	tatacgacgcgaatgcaaggagcattagagttaccacctggcttcagatttcaccctactgatgatgagcttgtgaatcactacttgtgtagaaagtgtg	39492541	T

Q	140	cttcccttccaattgctgttcctattatcaaagaaattgatttgtataagtttgatccatggc	202	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39492542	cttcccttccaattgctgttcctattatcaaagaaattgatttgtataagtttgatccatggc	39492604	T

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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 61; E-Value: 2e-26

Query Start/End: Original strand, 50 - 202

Target Start/End: Original strand, 44370809 - 44370961

Alignment:

Q	50	gaatgcaaggagcattagagttaccacctggcttcagatttcaccctactgatgatgagcttgtgaatcactacttgtgtagaaagtgtgcttcccttcc	149	Q
		\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\| \|\|\|\|\|\| \| \|
T	44370809	gaatgcaaggtgaattagaattaccacctggtttcagatttcaccctactgatgaagaattggtgaatcactacttgtgtcgcaaatgtgctggtcaatc	44370908	T

Q	150	aattgctgttcctattatcaaagaaattgatttgtataagtttgatccatggc	202	Q
		\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	44370909	tatttctgttcccgttgtcaaagaagttgatttgtataagtttgatccatggc	44370961	T

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