View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9706_high_5 (Length: 516)
Name: NF9706_high_5
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_high_5 |
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| [»] scaffold0244 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 17 - 501
Target Start/End: Original strand, 22054546 - 22055030
Alignment:
| Q |
17 |
catttgccacaagtattttgtccaaaagatggactcatctatgtcactttgttcctaagatcgacttcaccaacatcatattgaatagcgacgaatctta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
22054546 |
catttgccacaagtattttgtccaaaagatggactcatctatgtcactttgttcctaagatcgacttcaccaacatcatagtgaatagcgacgaatctaa |
22054645 |
T |
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| Q |
117 |
ttcccgttttcttcaatttgtggactccgttttggcctctcgagacgctgttttttctcatttcatcaatagtttctgcctagaaattttttacggtaac |
216 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||| |
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| T |
22054646 |
ttcccgttttattcaatttgtgaactccgttttggcctctcgagacgctgttttttctcatttcatcaatagtttctgccttgaaattcaatatggtaac |
22054745 |
T |
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| Q |
217 |
cctaatcttgctcatctcagcattcctagtatcgtcaaatgggtcaaccatgttgttgagcgcagactcgagtatctttgtctctgtctacatgttaata |
316 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22054746 |
cctaatcttgctcatctcagcattcccagtatcgtcaaatgggtcaaccatgttgttgagcgcagactcgagtatctttgtctctgtctacatgttaata |
22054845 |
T |
|
| Q |
317 |
acctacccaagtttccccttagtaccctcagatgcaaaacccttgtaactctcaaactccggggcttgcatctggtgggttttactcttccttccattgc |
416 |
Q |
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| T |
22054846 |
acctacccaagtttcccattagtaccctcggatgcaaaacccttgtaactctcaaactcaggggcttccatttggtgggtttttctcttccttccattgg |
22054945 |
T |
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| Q |
417 |
attcccatcactgagaacccttcacttgaagaatattgagtttactggtgttcaaggttttatgttagttttagctggatgtcca |
501 |
Q |
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| T |
22054946 |
actcccatcactgagaacccttcacttgaagaatattgagtttactggtattcaaggttttatgttagttttagctggatgtcca |
22055030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 354 - 501
Target Start/End: Original strand, 22075676 - 22075829
Alignment:
| Q |
354 |
aacccttgtaactctcaaactccggggcttgcatctggtgggttttactcttccttccattgcattc------ccatcactgagaacccttcacttgaag |
447 |
Q |
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||||||||||||||||||||| ||||| ||| ||| ||||||| |||||||||| |||| |||| ||||||||||||||||| || ||||| |
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| T |
22075676 |
aacccttgtaactctcaaactatttggcttccatttggagggtttttctcttccttcgattggattcggattcccatcactgagaaccctgcatttgaat |
22075775 |
T |
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| Q |
448 |
aatattgagtttactggtgttcaaggttttatgttagttttagctggatgtcca |
501 |
Q |
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| T |
22075776 |
aatattgaatttactgatattcaaacttttatgttatttttagctggatgtcca |
22075829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 22064333 - 22064393
Alignment:
| Q |
23 |
ccacaagtattttgtccaaaagatggactcatctatgtcactttgttcctaagatcgactt |
83 |
Q |
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| T |
22064333 |
ccacaagcattttgtccaaaagatggactcatctatgtcactttgtccctgagatcaactt |
22064393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 22 - 300
Target Start/End: Complemental strand, 7203 - 6925
Alignment:
| Q |
22 |
gccacaagtattttgtccaaaagatggactcatctatgtcactttgttcctaagatcgacttcaccaacatcatattgaatagcgacgaatcttattccc |
121 |
Q |
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| T |
7203 |
gccacaagcattttgtccaagagatggactaatctatgtcactttgttccgaaaatcgacttcactaacatctcagtgaatagctacgaatctaattcca |
7104 |
T |
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| Q |
122 |
gttttcttcaatttgtggactccgttttggcctctcgagacgctgttttttctcatttcatcaatagtttctgcctagaaattttttacggtaaccctaa |
221 |
Q |
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||||| ||||||| ||||||||||| ||||| |||| || |||||| ||||||||||| |||||||| |||| || ||| || ||||||||||| |
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| T |
7103 |
gttttaacaaatttgtttactccgttttgtcctctggagatgccgtttttcctcatttcatcgatagtttcagcctcgacattaaatatggtaaccctaa |
7004 |
T |
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| Q |
222 |
tcttgctcatctcagcattcctagtatcgtcaaatgggtcaaccatgttgttgagcgcagactcgagtatctttgtctc |
300 |
Q |
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||||||| ||||| || |||| | ||| || ||||| |||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
7003 |
tcttgcttatctcggctttcccaatattttcgaatggatcaaccatgttgttcagcgcagagtcgagtatcttcgtctc |
6925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 321 - 502
Target Start/End: Complemental strand, 6874 - 6687
Alignment:
| Q |
321 |
acccaagtttccccttagtaccctcagatgcaaaacccttgtaactctcaaactccggggcttgcatctggtgggttttactcttccttcca------tt |
414 |
Q |
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||||||||||||| | |||||||||| |||||||||||||||||||||||||||| | ||||| ||||||| | ||||| || || |||| | || |
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| T |
6874 |
acccaagtttcccatcagtaccctcacatgcaaaacccttgtaactctcaaactcagtggcttccatctggagagtttttctgtttcttcaattggattt |
6775 |
T |
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| Q |
415 |
gcattcccatcactgagaacccttcacttgaagaatattgagtttactggtgttcaaggttttatgttagttttagctggatgtccat |
502 |
Q |
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| T |
6774 |
ggattcccattactgagaacccttcatttaaggtacattgaatttactgatattcaagattttatgttatttttagctggatgtccat |
6687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 824330 - 824381
Alignment:
| Q |
20 |
ttgccacaagtattttgtccaaaagatggactcatctatgtcactttgttcc |
71 |
Q |
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|||| |||||| |||||||||| ||||||||||||||||| |||| |||||| |
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| T |
824330 |
ttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcc |
824381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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