View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9706_low_1 (Length: 673)
Name: NF9706_low_1
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 19 - 658
Target Start/End: Complemental strand, 18418227 - 18417585
Alignment:
| Q |
19 |
tagtacaaacacaatgttacaacctatgataagcgaattttgaataatctaaaaatgatctttgagacatccatatatcctagtgaaattgagaaataac |
118 |
Q |
| |
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||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
18418227 |
tagtacaaacataatgttacaacctatgatgagcgaattttgaacaatctaaaaatgatctttgagacatccatatatcctagtgaaattca--aataac |
18418130 |
T |
|
| Q |
119 |
tannnnnnnaagaagccaaaaataatatatattataaccgaacgactctcaacccagctcaaggcgtgccaaagaagagagcaaaagatatagagtcatc |
218 |
Q |
| |
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|| | |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18418129 |
tatttttttaggaagccaaaa-taatatatattataatcgaacgactctcaacccagctcaaggcgtgccaaagaagagagcaaaagatatagagtcatc |
18418031 |
T |
|
| Q |
219 |
caacaaagctagaagagaaaaaataacagaaatcagccaatgcccatacattgcagagggctaagccaccacctgtgatagtcaaaaacaaggtttgtga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18418030 |
caacaaagctagaagagaaaaaataacagaaatcagccaatgcccatacattgcagagggctaagccaccacctatgatagtcaaaaacaaggtttgtga |
18417931 |
T |
|
| Q |
319 |
atattgtgtttaaccagcagaaagaaatgagctgaacattatataaaaacttaatagtcgagcattctttgttgttgaaaattaagctattcctttcctt |
418 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |
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|
| T |
18417930 |
atattgtgtttaaccaccagaaagaaatgagctgaacattatctaaaaacttaatagtctaacattatttgttgttgaaaattaagctattcctttcctt |
18417831 |
T |
|
| Q |
419 |
ccaaatgatccaagtgcaagcacgccaaataagaaacataattgaagtcttcgcttttgatgtaccaactaaattgccaaactgaataaaatgatttaat |
518 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18417830 |
ccaaatgatccaagtgcaggcacgccaaataagaaacataattgaagtcttcgcttttgatgtaccaactaaattgccaaactgaataaaatgatctaat |
18417731 |
T |
|
| Q |
519 |
aacaaaaccggatgggccaagtcaaaacccaaccaatgatgaactagatgccataacgaaccaaacaatgaacaatcc------nnnnnnnngatgagtc |
612 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
18417730 |
aacaaaaccggatgggccaagtcaaaacccaaccaatgatgaactagatgccataatgaaccaaacaatgaacaatccaaaaaaaaaaaaaagatgagtc |
18417631 |
T |
|
| Q |
613 |
gccgactatctttaacctcaccaagttgagcatcttgggaaactat |
658 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18417630 |
gccgactatctttaaccacaccaagttgagcatcttgggaaactat |
18417585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 3e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 178 - 499
Target Start/End: Complemental strand, 10721904 - 10721583
Alignment:
| Q |
178 |
caaggcgtgccaaagaagagagcaaaagatatagagtcatccaacaaagctagaagagaaaaaataacagaaatcagccaatgcccatacattgcagagg |
277 |
Q |
| |
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|||||| ||||| |||||||| ||||||||| | ||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||| || ||||| |
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| T |
10721904 |
caaggcatgccagagaagagaacaaaagatacaaagtcatccaacaaagttagaatagaaaaaataacagaaatcagtcaatgtccatacagtgtagagg |
10721805 |
T |
|
| Q |
278 |
gctaagccaccacctgtgatagtcaaaaacaaggtttgtgaatattgtgtttaaccagcagaaagaaatgagctgaacattatataaaaacttaatagtc |
377 |
Q |
| |
|
||||||||||||||| ||||||||| || |||||||||||||| |||| |||||||| |||||||||| || || |||||||| ||||| |||||||||| |
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| T |
10721804 |
gctaagccaccacctatgatagtcagaagcaaggtttgtgaattttgtctttaaccaccagaaagaaaggaacttaacattatctaaaagcttaatagtc |
10721705 |
T |
|
| Q |
378 |
gagcattctttgttgttgaaaattaagctattcctttccttccaaatgatccaagtgcaagcacgccaaataagaaacataattgaagtcttcgcttttg |
477 |
Q |
| |
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|||||| |||||| ||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||| |
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|
| T |
10721704 |
aagcattatttgttattgaaaattttactattcatttccttccaaatgatccaagtgcaagcacatcaaataagaaatataattgaagtttttgcttttg |
10721605 |
T |
|
| Q |
478 |
atgtaccaactaaattgccaaa |
499 |
Q |
| |
|
|||||||| | |||||||||| |
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|
| T |
10721604 |
atgtaccatatgaattgccaaa |
10721583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 251 - 485
Target Start/End: Original strand, 12524524 - 12524758
Alignment:
| Q |
251 |
tcagccaatgcccatacattgcagagggctaagccaccacctgtgatagtcaaaaacaaggtttgtgaatattgtgtttaaccagcagaaagaaatgagc |
350 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||||||||||| ||||| |||||| |||| ||| |||| |||| |||| ||| || | |||| | || |
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|
| T |
12524524 |
tcagccaatgtccagacacaacagagggctaagccaccacctatgataatcaaaagcaagttttaagaattttgtctttagccaccaaatagaagtcagt |
12524623 |
T |
|
| Q |
351 |
tgaacattatataaaaacttaatagtcgagcattctttgttgttgaaaattaagctattcctttccttccaaatgatccaagtgcaagcacgccaaataa |
450 |
Q |
| |
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| |||||||| ||||| ||||| || |||||| ||||| | |||||||||| | ||||| |||||||| |||| ||||||| |||||||| |||||| | |
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| T |
12524624 |
ttaacattatctaaaagcttaagtgttgagcatgctttgatattgaaaattatgttattcatttccttcaaaataatccaagagcaagcacaccaaatca |
12524723 |
T |
|
| Q |
451 |
gaaacataattgaagtcttcgcttttgatgtacca |
485 |
Q |
| |
|
|||||||||||| || || | |||||| |||||| |
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|
| T |
12524724 |
aaaacataattgaggtttttgattttgaagtacca |
12524758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 343 - 546
Target Start/End: Original strand, 43119206 - 43119408
Alignment:
| Q |
343 |
aaatgagctgaacattatataaaaacttaatagtcgagcattctttgttgttgaaaattaagctattcctttccttccaaatgatccaagtgcaagcacg |
442 |
Q |
| |
|
||||||||| || ||||| ||||| |||||| ||| |||||||||| || || |||||| | |||||||||| ||||||||||||||||||||||||| |
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|
| T |
43119206 |
aaatgagcttaatattatctaaaagcttaattgtctagcattctttattattaaaaattcat-tattcctttcattccaaatgatccaagtgcaagcaca |
43119304 |
T |
|
| Q |
443 |
ccaaataagaaacataattgaagtcttcgcttttgatgtaccaactaaattgccaaactgaataaaatgatttaataacaaaaccggatgggccaagtca |
542 |
Q |
| |
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| ||||||||||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||||||||| |||||||||||||||| ||||||||| |
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|
| T |
43119305 |
ctaaataagaaacataattgatgtcttcgcttttgatgtactagctaaattgtcaaactgaataaaatgatttgataacaaaaccggatgagccaagtca |
43119404 |
T |
|
| Q |
543 |
aaac |
546 |
Q |
| |
|
|||| |
|
|
| T |
43119405 |
aaac |
43119408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 43119059 - 43119163
Alignment:
| Q |
137 |
aaaataatatatattataaccgaacgactctcaacccagctcaaggcgtgccaaagaagagagcaaaagatatagagtcatccaacaaagctagaagaga |
236 |
Q |
| |
|
||||| ||||||||||||||| ||| |||||||||||| | ||||| |||||| | |||||||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
43119059 |
aaaatgatatatattataaccaaactactctcaacccaacacaaggtgtgccagaaaagagagcaaaagatataaagtcattcaacaaagctagaagaga |
43119158 |
T |
|
| Q |
237 |
aaaaa |
241 |
Q |
| |
|
||||| |
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|
| T |
43119159 |
aaaaa |
43119163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 6e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 178 - 441
Target Start/End: Complemental strand, 23805791 - 23805524
Alignment:
| Q |
178 |
caaggcgtgccaaagaagagagcaaaagatatagagtcatccaacaaagctagaagagaaaaaataacagaaatcagccaatgcccatacattgca---- |
273 |
Q |
| |
|
||||| |||| | |||||||||||||||||| | || |||||||||||| ||||| |||||||||| ||||| ||||| |||| |||||| || |
|
|
| T |
23805791 |
caaggtgtgcaagagaagagagcaaaagatacaaagccatccaacaaagttagaaaagaaaaaatatcagaacccagcctatgctcatacacaacacaag |
23805692 |
T |
|
| Q |
274 |
-gagggctaagccaccacctgtgatagtcaaaaacaaggtttgtgaatattgtgtttaaccagcagaaagaaatgagctgaacattatataaaaacttaa |
372 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| |||||||| ||||| ||| |||||| | | ||||||||||||| | |||||| ||||| ||| | |
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|
| T |
23805691 |
agagggctaatccaccacctatgatagtcaaaagcaaggtttatgaattttgcctttaacgactaaaaagaaatgagcttagcattatctaaaagcttga |
23805592 |
T |
|
| Q |
373 |
tagtcgagcattctttgttgttgaaaattaagctattcctttccttccaaatgatccaagtgcaagcac |
441 |
Q |
| |
|
||| |||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23805591 |
tagatgagcattctttgttattgaaaattttgctattccttt-cttccaaatgatccaagtgcaagcac |
23805524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 128 - 320
Target Start/End: Original strand, 28838825 - 28839012
Alignment:
| Q |
128 |
aagaagccaaaaataatatatattataaccgaacgactctcaacccagctcaaggcgtgccaaagaagagagcaaaagatatagagtcatccaacaaagc |
227 |
Q |
| |
|
|||||||||||| | |||||||||| |||| ||| ||||||| |||| ||| |||| | |||||| ||||||| ||| |||||||||||||||||| |
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|
| T |
28838825 |
aagaagccaaaa-tgatatatattaaaaccaaactactctcacccca-----aggtgtgctagagaagatagcaaaatatacagagtcatccaacaaagc |
28838918 |
T |
|
| Q |
228 |
tagaagagaaaa-aataacagaaatcagccaatgcccatacattgcagagggctaagccaccacctgtgatagtcaaaaacaaggtttgtgaat |
320 |
Q |
| |
|
||||| | |||| ||||||| ||| || |||||| || ||| ||||||| |||||||||||||| |||||||||||| ||| |||| ||||| |
|
|
| T |
28838919 |
tagaaaataaaaaaataacaaaaactagtcaatgcacagacacggcagaggtctaagccaccacctatgatagtcaaaagcaaagtttatgaat |
28839012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 32900538 - 32900481
Alignment:
| Q |
248 |
aaatcagccaatgcccatacattgcagagggctaagccaccacctgtgatagtcaaaa |
305 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||| || || |||||| |
|
|
| T |
32900538 |
aaatcagccaatgcccatacatgataaagggctaagccaccacctatggtaatcaaaa |
32900481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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