View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9706_low_10 (Length: 463)

Name: NF9706_low_10
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9706_low_10
NF9706_low_10
[»] chr7 (3 HSPs)
chr7 (17-153)||(25009637-25009772)
chr7 (410-447)||(25007041-25007078)
chr7 (86-138)||(19337478-19337530)
[»] chr2 (2 HSPs)
chr2 (65-135)||(10926702-10926772)
chr2 (76-134)||(21198749-21198807)
[»] chr8 (2 HSPs)
chr8 (65-138)||(26674778-26674851)
chr8 (65-138)||(16667134-16667207)
[»] chr5 (3 HSPs)
chr5 (86-138)||(31058686-31058738)
chr5 (76-133)||(31043465-31043522)
chr5 (66-134)||(16491801-16491869)
[»] scaffold0008 (1 HSPs)
scaffold0008 (59-138)||(260312-260391)
[»] chr3 (1 HSPs)
chr3 (66-137)||(6160081-6160152)
[»] chr1 (1 HSPs)
chr1 (89-137)||(12865394-12865442)


Alignment Details
Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 25009772 - 25009637
Alignment:
Q  17 acatattgattgctttctctctgcgagcttgttgtcttctgcgatccccagacacatgtttcacagacgaattcaacagggacaagttgaaaaagtgctt 116  Q
    ||||| |||||||||| |||||| |||| ||||| || |||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||      
T  25009772 acataatgattgcttt-tctctgtgagcatgttgactcctgcgatccatagacacatgtttcagagacgaattcaacagggacaagttgaaaaagtgcac 25009674  T
Q  117 ggaaaagcaacatgtctcctaaattaatgacattacc 153  Q
    | |||||||||||||||| ||||||||||||||||||    
T  25009673 gaaaaagcaacatgtctcataaattaatgacattacc 25009637  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 447
Target Start/End: Complemental strand, 25007078 - 25007041
Alignment:
Q  410 agtgcaatgctttgcattctttatttctaattgtgatg 447  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25007078 agtgcaatgctttgcattctttatttctaattgtgatg 25007041  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 19337530 - 19337478
Alignment:
Q  86 aattcaacagggacaagttgaaaaagtgcttggaaaagcaacatgtctcctaa 138  Q
    ||||||||| ||||||||  |||||||||   |||||||||||||||||||||    
T  19337530 aattcaacatggacaagtataaaaagtgcacagaaaagcaacatgtctcctaa 19337478  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 10926702 - 10926772
Alignment:
Q  65 cagacacatgtttcacagacgaattcaacagggacaagttgaaaaagtgcttggaaaagcaacatgtctcc 135  Q
    |||||||||| |||||| || ||||||||| |||||||| ||||||||||  |||||||||||||||||||    
T  10926702 cagacacatgcttcacatacaaattcaacaaggacaagtagaaaaagtgcacggaaaagcaacatgtctcc 10926772  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 21198807 - 21198749
Alignment:
Q  76 ttcacagacgaattcaacagggacaagttgaaaaagtgcttggaaaagcaacatgtctc 134  Q
    |||||||||||||||||||||||| ||| ||||||| || || |||| |||||| ||||    
T  21198807 ttcacagacgaattcaacagggacgagtagaaaaagggcatgaaaaaacaacatttctc 21198749  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 26674851 - 26674778
Alignment:
Q  65 cagacacatgtttcacagacgaattcaacagggacaagttgaaaaagtgcttggaaaagcaacatgtctcctaa 138  Q
    |||||||||| |||||| || ||||||| |||||||||| |||||||||   ||||||||||||||||||||||    
T  26674851 cagacacatgcttcacaaacaaattcaatagggacaagtagaaaaagtgtacggaaaagcaacatgtctcctaa 26674778  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 16667134 - 16667207
Alignment:
Q  65 cagacacatgtttcacagacgaattcaacagggacaagttgaaaaagtgcttggaaaagcaacatgtctcctaa 138  Q
    |||||||||| |||||| || |||||| || | |||||| |||| |||||  ||||||||||||||||||||||    
T  16667134 cagacacatgcttcacaaacaaattcagcatgaacaagtagaaagagtgcacggaaaagcaacatgtctcctaa 16667207  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 31058738 - 31058686
Alignment:
Q  86 aattcaacagggacaagttgaaaaagtgcttggaaaagcaacatgtctcctaa 138  Q
    |||||||||||||||||| || |||||||  ||||||||||||||||||||||    
T  31058738 aattcaacagggacaagtagagaaagtgcacggaaaagcaacatgtctcctaa 31058686  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 31043522 - 31043465
Alignment:
Q  76 ttcacagacgaattcaacagggacaagttgaaaaagtgcttggaaaagcaacatgtct 133  Q
    |||||| || |||||||||||||||||| || |||||||  |||||||||||||||||    
T  31043522 ttcacatacaaattcaacagggacaagtagagaaagtgcacggaaaagcaacatgtct 31043465  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 16491869 - 16491801
Alignment:
Q  66 agacacatgtttcacagacgaattcaacagggacaagttgaaaaagtgcttggaaaagcaacatgtctc 134  Q
    ||||||| | ||||| ||| || ||||||||||| ||| |||| |||||  ||||||||||||||||||    
T  16491869 agacacagggttcactgacaaaatcaacagggacgagtagaaagagtgcacggaaaagcaacatgtctc 16491801  T

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Target: scaffold0008 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 260391 - 260312
Alignment:
Q  59 gatccccagacacatgtttcacagacgaattcaacagggacaagttgaaaaagtgcttggaaaagcaacatgtctcctaa 138  Q
    ||||| |||||||| | |||| |||| ||||||||| ||| |||| ||||||||||  ||||||| ||||||||||||||    
T  260391 gatccacagacacaagcttcatagacaaattcaacatggaaaagtagaaaaagtgcacggaaaagtaacatgtctcctaa 260312  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 6160152 - 6160081
Alignment:
Q  66 agacacatgtttcacagacgaattcaacagggacaagttgaaaaagtgcttggaaaagcaacatgtctccta 137  Q
    ||||||| | ||||||||| || ||||||||||| ||| |||| |||||  |||||||||||||||||||||    
T  6160152 agacacagggttcacagacaaaatcaacagggacgagtagaaagagtgcacggaaaagcaacatgtctccta 6160081  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 12865442 - 12865394
Alignment:
Q  89 tcaacagggacaagttgaaaaagtgcttggaaaagcaacatgtctccta 137  Q
    ||||||||||||||| |||||||||| || ||||| |||||||||||||    
T  12865442 tcaacagggacaagtagaaaaagtgcatgaaaaagaaacatgtctccta 12865394  T

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