View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9706_low_11 (Length: 458)
Name: NF9706_low_11
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 30880943 - 30880511
Alignment:
| Q |
1 |
agtgttggtgttggatcatagcactattaataacgttgatgatataacttgttccttaatggttcagttacagataccacatactcttaaaagagaagaa |
100 |
Q |
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| T |
30880943 |
agtgttggtgttggatcatagcactattaataaccttgataatataacttgttccttaatggttcagttacagataccacatactcttaaaagagaagaa |
30880844 |
T |
|
| Q |
101 |
tagctcaattctcagtaaaaacttgttaaccaaagttggatcatctgaattctattgaaaccaccttggtcgatagtttggctttggcaaaacactcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30880843 |
tagctcaattctcagtaaaaacttgttaaccaaagttggatcatctgaattctattgaaaccaccttggtcgatagtttggctttggcaaaacactcaat |
30880744 |
T |
|
| Q |
201 |
aaataacatcctagatgatgatcaacatctggctttggcacaatagtctttaacaggaaaatcaaccaatgaagtggctgatgttgatcgaagttctagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30880743 |
aaataacatcctagatgatgatcaacatctggctttggcaaaatagtctttaacaggaaaatcaaccaatgaagtggctgatgttgatcgaagttctagt |
30880644 |
T |
|
| Q |
301 |
gataacattgctaatgcaacttctctggcttttgttgtaagaaacataaaaaatgaggttcacagctcaagaggaaagatcaccgaatttcatttgagtg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30880643 |
gataacattgctaatgcaacttctctggcttttgttgtaagaaacataaaaaatgaggttcacagctcaagaggaaagatcatcgaatttcatttgagtg |
30880544 |
T |
|
| Q |
401 |
actttgagtttgatgactttatctctatctctc |
433 |
Q |
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| T |
30880543 |
actttgagtttgatgactttatctttatctctc |
30880511 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 433
Target Start/End: Complemental strand, 7537094 - 7537058
Alignment:
| Q |
397 |
agtgactttgagtttgatgactttatctctatctctc |
433 |
Q |
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|||||||||||||||| ||||||| |||||||||||| |
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| T |
7537094 |
agtgactttgagtttggtgactttgtctctatctctc |
7537058 |
T |
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