View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9706_low_12 (Length: 456)
Name: NF9706_low_12
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 7 - 439
Target Start/End: Complemental strand, 32783456 - 32783023
Alignment:
| Q |
7 |
tttggtggtggtatt-gtacatttaaattgcatgatttagtgcatgatcttgcattgtatgttgcaagagatgagtttcaattgatgaaatttcataatg |
105 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32783456 |
tttggtggtggtatttgtacatttaaattgcatgatttagtgcatgatcttgcagtgtatgttgcaagagatgagtttcaattgattgaatttcataatg |
32783357 |
T |
|
| Q |
106 |
aaaatatactcgagaatgtccttcatctgtcatttattaaaaatgatttgcttggcgtaacaccagttcctactggtctgagaactatgctatttcctga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32783356 |
aaaatatactcgagaatgtccttcatctgtcatttattaaaaatgatttgcttggcgtaacaccagttcctactggtctgagaactatgctatttcctga |
32783257 |
T |
|
| Q |
206 |
ggaagccaacaatgaagctttcttaaaaactttggcgtcaaggtgcaaattcttacgggttttacagttaactgattctacatatgagagtttgccccgc |
305 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
32783256 |
ggaagccaacgataaagcttttttaaaaactttggcgtcaaggtgcaaattcttacggcttttacagttagctgattctaaatatgagagtttgccccgc |
32783157 |
T |
|
| Q |
306 |
tctattggcaaattaaaacatttgagatatctcaatcttaagaatagtaaagaattgaagagcctccctaattcactgtgcaaactccagaatctgcata |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32783156 |
tctattggcaaattaaaacatttgagatatctcaatcttaagaatagtaaagaattgaagagcctccctaattcactgtgcaaactccagaatctgcata |
32783057 |
T |
|
| Q |
406 |
ctttggatctcgatggatgcatagagcttcaaac |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
32783056 |
ctttggatctcgatggatgcatagagcttcaaac |
32783023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 26 - 439
Target Start/End: Original strand, 49341455 - 49341867
Alignment:
| Q |
26 |
atttaaattgcatgatttagtgcatgatcttgcattgtatgttgcaagagatgagtttcaattgatgaaatttcataatgaaaatatactcgagaatgtc |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
49341455 |
atttaaattgcatgatttagtgcatgatctctcattgtatgttgcaagagatgagtttcaattgttgaaatttcatgatgaaaatatattcgagaatgtc |
49341554 |
T |
|
| Q |
126 |
cttcatctgtcatttattaaaaatgatttgcttggcgtaacaccagttcctactggtctgagaactatgctatttcctgaggaagccaacaatgaagctt |
225 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||| ||||||||||| ||| ||| ||||||||||||| |
|
|
| T |
49341555 |
cttcatttgtcatttattaaaaatgatttgcttggcctaacacgagttcctacaggtctgagaaccatgctatttcccaagggagctaacaatgaagctt |
49341654 |
T |
|
| Q |
226 |
tcttaaaaactttggcgtcaaggtgcaaattcttacgggttttacagttaactgattctacatatgagagtttgccccgctctattggcaaattaaaaca |
325 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||||| || ||||||| |||| || |||||| |||||||||||| |||||||||||| | ||||||||||| |
|
|
| T |
49341655 |
tcttgaaaacattggcgtcaaggttcaaattcttgcgtgttttacggttagctcattctaaatatgagagttttccccgctctatttgaaaattaaaaca |
49341754 |
T |
|
| Q |
326 |
tttgagatatctcaatcttaagaatagtaaagaattgaagagcctccctaattcactgtgcaaactccagaatctgcatactttggatctcgatggatgc |
425 |
Q |
| |
|
||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
49341755 |
tttaagatatctcaatcttgagaataataaagaattgaagagcctccctaattcagtgtgcaaactccagaatctgcatacttt-gatctcgatggttgc |
49341853 |
T |
|
| Q |
426 |
atagagcttcaaac |
439 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
49341854 |
ataaagcttcaaac |
49341867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 27 - 434
Target Start/End: Original strand, 49352834 - 49353241
Alignment:
| Q |
27 |
tttaaattgcatgatttagtgcatgatcttgcattgtatgttgcaagagatgagtttcaattgatgaaatttcataatgaaaatatactcgagaatgtcc |
126 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
49352834 |
tttaaattgcatgatttggtgcatgatctttcattgtatgttgcaagagatgagtttcaattgttgaaatttcataatgaaaatatactcgagaatgtcc |
49352933 |
T |
|
| Q |
127 |
ttcatctgtcatttattaaaaatgatttgcttggcgtaacaccagttcctactggtctgagaactatgctatttcctgaggaagccaacaatgaagcttt |
226 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||| || ||||||||||| |||||||| || |||||||| ||| |||||||||||||||||| |
|
|
| T |
49352934 |
ttcatctgtcatttcttaaaaatgatttgcttggcctaacgccggttcctactggcctgagaaccttgatatttcctaagggagccaacaatgaagcttt |
49353033 |
T |
|
| Q |
227 |
cttaaaaactttggcgtcaaggtgcaaattcttacgggttttacagttaactgattctacatatgagagtttgccccgctctattggcaaattaaaacat |
326 |
Q |
| |
|
||| |||||||||| |||||||||||||||||| || |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
49353034 |
cttgaaaactttggtgtcaaggtgcaaattcttgcgtgttttacagttacctgattctacatacgagagtttgccccgctctattggcaaattaaaacat |
49353133 |
T |
|
| Q |
327 |
ttgagatatctcaatcttaagaatagtaaagaattgaagagcctccctaattcactgtgcaaactccagaatctgcatactttggatctcgatggatgca |
426 |
Q |
| |
|
|| ||||||||||||||| || || ||||||||||||||||| ||| | ||| ||||||||||||||||||| | |||||| | ||| |||| |||| |
|
|
| T |
49353134 |
ttaagatatctcaatcttggaaaaagcaaagaattgaagagccttcctgactcattgtgcaaactccagaatctatacactttgaaactcaatggttgca |
49353233 |
T |
|
| Q |
427 |
tagagctt |
434 |
Q |
| |
|
|| ||||| |
|
|
| T |
49353234 |
taaagctt |
49353241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 27 - 253
Target Start/End: Original strand, 19030793 - 19031019
Alignment:
| Q |
27 |
tttaaattgcatgatttagtgcatgatcttgcattgtatgttgcaagagatgagtttcaattgatgaaatttcataatgaaaatatactcgagaatgtcc |
126 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||| |||||| | | |
|
|
| T |
19030793 |
tttaacttgcatgatttagtgcacgatcttgcattgtatgttgcaaaagatgagtttcagttgttgaaatttcataatgaaaatatatcagagaatattc |
19030892 |
T |
|
| Q |
127 |
ttcatctgtcatttattaaaaatgatttgcttggcgtaacaccagttcctactggtctgagaactatgctatttcctgaggaagccaacaatgaagcttt |
226 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||| |||||||| |||||||| ||| ||||||| |||||||||| |
|
|
| T |
19030893 |
ttcatctgtcatttattgaaaatgatttgcttggcaaaacaccaattcctactggtctaagaactatcatatttcctaagggagccaacgatgaagcttt |
19030992 |
T |
|
| Q |
227 |
cttaaaaactttggcgtcaaggtgcaa |
253 |
Q |
| |
|
||| || | ||||| ||||||||||| |
|
|
| T |
19030993 |
cttgaacattttggtatcaaggtgcaa |
19031019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 26 - 410
Target Start/End: Complemental strand, 29602072 - 29601688
Alignment:
| Q |
26 |
atttaaattgcatgatttagtgcatgatcttgcattgtatgttgcaagagatgagtttcaattgatgaaatttcataatgaaaatatactcgagaatgtc |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| ||||| | ||||||||||||||| | ||||||| |
|
|
| T |
29602072 |
atttaaattgcatgatttagtgcatgatcttgccctatatgttgccagagatgagtttcaattgctgaaactccataatgaaaatataattaagaatgtt |
29601973 |
T |
|
| Q |
126 |
cttcatctgtcatttattaaaaatgatttgcttggcgtaacaccagttcctactggtctgagaactatgctatttcctgaggaagccaacaatgaagctt |
225 |
Q |
| |
|
|| ||| ||||||||| || ||||||||| ||||| ||||||| |||| | || |||||||| || || ||||| ||||||||||||| ||||| |
|
|
| T |
29601972 |
ctccatttgtcatttactacaaatgatttacttggacaaacaccaattcccgcaggactgagaaccatactttttccattagaagccaacaatgtagctt |
29601873 |
T |
|
| Q |
226 |
tcttaaaaactttggcgtcaaggtgcaaattcttacgggttttacagttaactgattctacatatgagagtttgccccgctctattggcaaattaaaaca |
325 |
Q |
| |
|
| || || | |||||| |||||||| |||||||| || ||||| | ||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
29601872 |
ttttgaacaatttggcatcaaggtgtaaattcttgcgagttttgcggttaactcattctacatatgagagtttgccccgctcaattggtaaattaaaaca |
29601773 |
T |
|
| Q |
326 |
tttgagatatctcaatcttaagaatagtaaagaattgaagagcctccctaattcactgtgcaaactccagaatctgcatactttg |
410 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||| ||||| |||||||||| |||||| |||| |||||| |
|
|
| T |
29601772 |
tttgagatatctcaatcttaagggaaataaagaattgaagagcctccctgattcagtgtgcaaacttcagaatttgcaaactttg |
29601688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 26 - 410
Target Start/End: Original strand, 29751222 - 29751606
Alignment:
| Q |
26 |
atttaaattgcatgatttagtgcatgatcttgcattgtatgttgcaagagatgagtttcaattgatgaaatttcataatgaaaatatactcgagaatgtc |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||||||| | ||||||| |
|
|
| T |
29751222 |
atttaaattgcatgatttagtgcatgatcttgccctatatgttgcaagagatgagtttcaattgctgaaattccataatgaaaatataattaagaatgtt |
29751321 |
T |
|
| Q |
126 |
cttcatctgtcatttattaaaaatgatttgcttggcgtaacaccagttcctactggtctgagaactatgctattt-cctgaggaagccaacaatgaagct |
224 |
Q |
| |
|
|| ||| ||||||||| || ||||||||| ||||| ||||||| |||| | || |||||||| || || ||| || ||||||||||||| |||| |
|
|
| T |
29751322 |
ctccatttgtcatttactacaaatgatttacttggacaaacaccaattcccgcaggactgagaaccatacttttttccattagaagccaacaatgtagct |
29751421 |
T |
|
| Q |
225 |
ttcttaaaaactttggcgtcaaggtgcaaattcttacgggttttacagttaactgattctacatatgagagtttgccccgctctattggcaaattaaaac |
324 |
Q |
| |
|
|| || || | |||||| |||||||| |||||||| || ||||| | ||||||| ||||||||||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
29751422 |
tttttgaacaatttggcatcaaggtgtaaattcttgcgagttttgcggttaactcattctacatatgagagttttccccgctcaattggtaaattaaaac |
29751521 |
T |
|
| Q |
325 |
atttgagatatctcaatcttaagaatagtaaagaattgaagagcctccctaattcactgtgcaaactccagaatctgcatactttg |
410 |
Q |
| |
|
|||||||||||||| |||||||| | ||||||||||||||||||||| ||||| |||||||||| |||||| |||| |||||| |
|
|
| T |
29751522 |
atttgagatatctc-atcttaagggaaataaagaattgaagagcctcccagattcagtgtgcaaacttcagaatttgcaaactttg |
29751606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 20 - 425
Target Start/End: Original strand, 29744183 - 29744587
Alignment:
| Q |
20 |
ttgtacatttaaattgcatgatttagtgcatgatcttgcattgtatgttgcaagagatgagtttcaattgatgaaatttcataatgaaaatatactcgag |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| | ||||| ||||||||||||||| | ||| |
|
|
| T |
29744183 |
ttgtgcatttaaattgcatgatttagtgcatgatcttgccctatatgttgcaagagattagtttcaattgttaaaattccataatgaaaatataattgag |
29744282 |
T |
|
| Q |
120 |
aatgtccttcatctgtcatttattaaaaatgatttgcttggcgtaacaccagttcctactggtctgagaactatgctatttcctgaggaagccaacaatg |
219 |
Q |
| |
|
||||| || ||| ||||||||| || ||||||||||||||| |||| || |||| ||||| ||||||| || || ||||| | || |||||||| |
|
|
| T |
29744283 |
aatgttctccatttgtcatttactacaaatgatttgcttggacaaacatcaattcccactggattgagaaccatactttttccataa-aatccaacaata |
29744381 |
T |
|
| Q |
220 |
aagctttcttaaaaactttggcgtcaaggtgcaaattcttacgggttttacagttaactgattctacatatgagagtttgccccgctctattggcaaatt |
319 |
Q |
| |
|
||||||||| || | |||||| ||||||| |||||||| || ||||| ||||||||| |||||| |||||||||||| |||||||| |||| ||||| |
|
|
| T |
29744382 |
tagctttcttgaacaatttggcatcaaggtttaaattcttgcgagttttgcagttaactaattctaaatatgagagtttaccccgctcaattgataaatt |
29744481 |
T |
|
| Q |
320 |
aaaacatttgagatatctcaatcttaagaatagtaaagaattgaagagcctccctaattcactgtgcaaactccagaatctgcatactttggatctcgat |
419 |
Q |
| |
|
||| |||||| |||||||||||||| || | | |||||||||||||| ||||||| ||||| |||||||||| |||||| |||| ||||| |||||| | |
|
|
| T |
29744482 |
aaagcatttgcgatatctcaatcttcaggacaataaagaattgaagatcctccctgattcagtgtgcaaacttcagaatttgcaatctttgaatctcggt |
29744581 |
T |
|
| Q |
420 |
ggatgc |
425 |
Q |
| |
|
|||||| |
|
|
| T |
29744582 |
ggatgc |
29744587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 35933824 - 35933788
Alignment:
| Q |
36 |
catgatttagtgcatgatcttgcattgtatgttgcaa |
72 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
35933824 |
catgatttggtgcacgatcttgcattgtatgttgcaa |
35933788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 394
Target Start/End: Original strand, 35158344 - 35158708
Alignment:
| Q |
30 |
aaattgcatgatttagtgcatgatcttgcattgtatgttgcaagagatgagtttcaattgatgaaatttcataatgaaaatatactcgagaatgtccttc |
129 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||||||||||| ||||||| |||||||||||| |||| | |||| ||| |||||| || |||| | | | |
|
|
| T |
35158344 |
aaattgcacgatctagtgcatgaccttgcattgtatgtttcaagagacgagtttcaattgttgaactcccatagtgacaatatatctgaaaatgccttac |
35158443 |
T |
|
| Q |
130 |
atctgtcatttattaaaaatgatttgcttggcgtaacaccagttcctactggtctgagaactatgctatttcctgaggaagccaacaatgaagctttctt |
229 |
Q |
| |
|
|| ||||||||| ||||||| ||||| |||| ||| ||| |||| | ||| ||||||| || || || || | | || |||||| ||||||||||| |
|
|
| T |
35158444 |
atttgtcatttactaaaaattatttgtttggaaaaactccacttcccagaggtttgagaaccatacttttcccagtcggagtcaacaacgaagctttctt |
35158543 |
T |
|
| Q |
230 |
aaaaactttggcgtcaaggtgcaaattcttacgggttttacagttaactgattctacatatgagagtttgccccgctctattggcaaattaaaacatttg |
329 |
Q |
| |
|
|| ||||||| |||||||||| || ||| |||||||| || ||| | ||||| ||||||||| ||||| |||| ||||| ||||||||||| ||| |
|
|
| T |
35158544 |
gaatactttggtatcaaggtgcacatgcttgcgggttttgcaaataaataattctggatatgagagcttgcctagctccattggtaaattaaaacacttg |
35158643 |
T |
|
| Q |
330 |
agatatctcaatcttaagaatagtaaagaattgaagagcctccctaattcactgtgcaaactcca |
394 |
Q |
| |
|
||||||||||||||| | ||| | || || | |||||| ||||| ||||| ||||||||||||| |
|
|
| T |
35158644 |
agatatctcaatcttgaagataatgaaaaactcaagagcgtccctgattcagtgtgcaaactcca |
35158708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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