View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9706_low_13 (Length: 447)

Name: NF9706_low_13
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9706_low_13
NF9706_low_13
[»] chr3 (2 HSPs)
chr3 (1-436)||(10878772-10879207)
chr3 (180-251)||(15960490-15960561)
[»] scaffold0496 (1 HSPs)
scaffold0496 (244-436)||(10856-11048)
[»] chr7 (3 HSPs)
chr7 (180-279)||(13262726-13262825)
chr7 (180-253)||(9064520-9064593)
chr7 (179-226)||(5291209-5291256)
[»] chr2 (1 HSPs)
chr2 (20-121)||(25917343-25917444)
[»] chr6 (1 HSPs)
chr6 (180-251)||(17446794-17446865)
[»] scaffold0412 (1 HSPs)
scaffold0412 (151-250)||(557-656)
[»] chr4 (1 HSPs)
chr4 (192-256)||(17527492-17527556)
[»] chr1 (1 HSPs)
chr1 (180-256)||(24155118-24155194)
[»] chr5 (1 HSPs)
chr5 (180-251)||(20966944-20967015)
[»] scaffold0044 (1 HSPs)
scaffold0044 (149-250)||(92267-92368)
[»] scaffold1339 (1 HSPs)
scaffold1339 (180-256)||(1210-1286)


Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 10878772 - 10879207
Alignment:
Q  1 cttaaccgtgccacataagaagatctagttagaaaaatatgtccttagaaaatgttcctagcagttcagggagaaaccaccatgcaactgtctactatga 100  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10878772 cttaaccgtgccatataagaagatctagtgagaaaaatatgtccttagaaaatgttcctagcacttcagggagaaaccaccatgcaactgtctactatga 10878871  T
Q  101 tttcaacacttccaaagttgaaaatgacagctactctaagaaatctcaatttttcaatgcaaatgctactcaggttttatggtggaaaagtaaaatgtat 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||    
T  10878872 ttacaacacttccaaagttgaaaatgacagctactctaagaaatctcaatttttcaatggaaatgctactcaggttttttggtggaagagtaaaatgtat 10878971  T
Q  201 agtcacatcatgagtattgatgatgaactatgggatattattgaagatggtattgagattgctgttgataaagaaggaatggcacgtgacagaaatagtc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10878972 agtcacatcatgagtattgatgatgaactatgggatattattgaagatggtattgagattgctgttgataaagaaggaatggcacgtgacagaaatagtc 10879071  T
Q  301 ttactgaggctgagaagaagatctacagaaagcatcatagggtgcgtggaagtcttgtagaagctataccttactcaaaatatgtgaagattgtcaacaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10879072 ttactgaggctgagaagaagatctacagaaagcatcatagggtgcgtggaagtcttgtagaagctataccttactcaaaatatgtgaagattgtcaacaa 10879171  T
Q  401 atcctctgccaaaaccatctttgaatctctctgctc 436  Q
    |||||||||||||||||||||||||||||| |||||    
T  10879172 atcctctgccaaaaccatctttgaatctctgtgctc 10879207  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 15960490 - 15960561
Alignment:
Q  180 tggtggaaaagtaaaatgtatagtcacatcatgagtattgatgatgaactatgggatattattgaagatggt 251  Q
    ||||||||||  || |||||||||||||||||| || | ||||||||||||||||||||| |||||||||||    
T  15960490 tggtggaaaaccaatatgtatagtcacatcatgggtttagatgatgaactatgggatattcttgaagatggt 15960561  T

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Target: scaffold0496 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 436
Target Start/End: Complemental strand, 11048 - 10856
Alignment:
Q  244 aagatggtattgagattgctgttgataaagaaggaatggcacgtgacagaaatagtcttactgaggctgagaagaagatctacagaaagcatcatagggt 343  Q
    |||||| ||||||| |||  |||||| |||||| |||| || |||||||||||||||| ||||||||| |  ||||| ||||| ||||||||||||||||    
T  11048 aagatgatattgagtttgaagttgatgaagaagaaatgacaagtgacagaaatagtctaactgaggctcattagaagttctacggaaagcatcatagggt 10949  T
Q  344 gcgtggaagtcttgtagaagctataccttactcaaaatatgtgaagattgtcaacaaatcctctgccaaaaccatctttgaatctctctgctc 436  Q
    || | ||| |||| |||| | | ||||| | ||| ||||| ||||||||||||| |  ||  ||| ||| ||||| ||||||||||| |||||    
T  10948 gcatagaattcttatagatgttctacctcattcagaatatttgaagattgtcaataggtctactgtcaagaccatatttgaatctctgtgctc 10856  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 13262825 - 13262726
Alignment:
Q  180 tggtggaaaagtaaaatgtatagtcacatcatgagtattgatgatgaactatgggatattattgaagatggtattgagattgctgttgataaagaaggaa 279  Q
    |||||||||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||| | ||||||||| |||| ||| || | ||| |||||||||    
T  13262825 tggtggaaaagtaagatgtacagtcatatcatgggtattgatgatgaactttgggatattttagaagatggttttgacattcctctagatgaagaaggaa 13262726  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 9064593 - 9064520
Alignment:
Q  180 tggtggaaaagtaaaatgtatagtcacatcatgagtattgatgatgaactatgggatattattgaagatggtat 253  Q
    |||||||||||||| ||||||||||| |||||  || |||| |||||||| ||| | || ||||||||||||||    
T  9064593 tggtggaaaagtaagatgtatagtcatatcattggtgttgaagatgaactttggaacatcattgaagatggtat 9064520  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 5291209 - 5291256
Alignment:
Q  179 atggtggaaaagtaaaatgtatagtcacatcatgagtattgatgatga 226  Q
    ||||||||||||||||||||||| |||||||||  || ||||||||||    
T  5291209 atggtggaaaagtaaaatgtataatcacatcatcggtcttgatgatga 5291256  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 25917343 - 25917444
Alignment:
Q  20 aagatctagttagaaaaatatgtccttagaaaatgttcctagcagttcagggagaaaccaccatgcaactgtctactatgatttcaacacttccaaagtt 119  Q
    |||||||||| || |||| ||||| |  || ||||  ||||||| |||||| ||||||||||||||| | ||||||||||||| ||||||| ||||||||    
T  25917343 aagatctagtgaggaaaacatgtcttatgacaatgaacctagcacttcaggaagaaaccaccatgcagccgtctactatgattacaacactcccaaagtt 25917442  T
Q  120 ga 121  Q
    ||    
T  25917443 ga 25917444  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 17446794 - 17446865
Alignment:
Q  180 tggtggaaaagtaaaatgtatagtcacatcatgagtattgatgatgaactatgggatattattgaagatggt 251  Q
    ||||||||||  || |||||||||||||||||| || | ||||||||||| ||||||||| |||||||||||    
T  17446794 tggtggaaaaccaagatgtatagtcacatcatgggtttagatgatgaactttgggatattcttgaagatggt 17446865  T

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Target: scaffold0412 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 250
Target Start/End: Original strand, 557 - 656
Alignment:
Q  151 ttttcaatgcaaatgctactcaggttttatggtggaaaagtaaaatgtatagtcacatcatgagtattgatgatgaactatgggatattattgaagatgg 250  Q
    ||||||||| | || |||||||| | |  |||||||| |||||||| |||||| |||||||  | |||||||||||||| |||||| ||||| |||||||    
T  557 ttttcaatggagattctactcagttctcttggtggaagagtaaaatctatagttacatcatagggattgatgatgaactctgggatgttattaaagatgg 656  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 17527492 - 17527556
Alignment:
Q  192 aaaatgtatagtcacatcatgagtattgatgatgaactatgggatattattgaagatggtattga 256  Q
    |||||||||||||| |||||| | || ||||| |||| |||||||||| ||||||||||| ||||    
T  17527492 aaaatgtatagtcatatcatgggcatagatgaagaacaatgggatattcttgaagatggtgttga 17527556  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 24155118 - 24155194
Alignment:
Q  180 tggtggaaaagtaaaatgtatagtcacatcatgagtattgatgatgaactatgggatattattgaagatggtattga 256  Q
    ||||||||||| || |||||||||||||||||   ||||||| | |||||  || |||| |||||||||||||||||    
T  24155118 tggtggaaaagcaagatgtatagtcacatcattgatattgattaagaacttcggaatatcattgaagatggtattga 24155194  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 20967015 - 20966944
Alignment:
Q  180 tggtggaaaagtaaaatgtatagtcacatcatgagtattgatgatgaactatgggatattattgaagatggt 251  Q
    ||||||||||  ||||| ||||||||||| |||||| | ||||| |||||||||||| |  |||||||||||    
T  20967015 tggtggaaaaccaaaatttatagtcacattatgagtttagatgaagaactatgggatgtgcttgaagatggt 20966944  T

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Target: scaffold0044 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 250
Target Start/End: Original strand, 92267 - 92368
Alignment:
Q  149 atttttcaatgcaaatgctactcaggttttatggtggaaaagtaaaatgtatagtcacatcatgagtattgatgatgaactatgggatattattgaagat 248  Q
    ||||||||||| | ||||| ||||| | |  ||||| || || |||||||||||| |||||||    |||||||||||||| |||||| ||||| |||||    
T  92267 atttttcaatggagatgctcctcagttatcttggtgcaagagcaaaatgtatagttacatcatatagattgatgatgaactctgggatgttattaaagat 92366  T
Q  249 gg 250  Q
    ||    
T  92367 gg 92368  T

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Target: scaffold1339 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 1286 - 1210
Alignment:
Q  180 tggtggaaaagtaaaatgtatagtcacatcatgagtattgatgatgaactatgggatattattgaagatggtattga 256  Q
    ||||||||| | ||||||||||||||||||||  |||| ||||| |||||  |||| || |||||| ||||| ||||    
T  1286 tggtggaaagggaaaatgtatagtcacatcattggtatagatgaagaacttcgggacatcattgaaaatggtgttga 1210  T

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