View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9706_low_14 (Length: 442)
Name: NF9706_low_14
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 53657386 - 53657821
Alignment:
| Q |
1 |
ggagcaacacaattatgtggaatggatcgtgaagcgagggttatgaggtacagagagaaaaggaagaaccgaaaattcgagaagactattcgttacgctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53657386 |
ggagcaacacaattatgtggaatggatcgtgaagcgagggttatgaggtacagagagaaaaggaagaaccgaaaattcgagaagactattcgttacgctt |
53657485 |
T |
|
| Q |
101 |
cacgaaaagcttatgcagaaacccggcctagaattaaaggccggttcgctaaacgaaccgaaattgactcggatgtggaccgtctctataaccctgctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53657486 |
cacgaaaagcttatgcagaaacccggcctagaattaaaggccggttcgctaaacgaaccgaaattgactcggatgtggaccgtctctataaccctgctga |
53657585 |
T |
|
| Q |
201 |
tcctctctcagttccttcatctatgctaatggactgtccatacggcgtcgttcccacgttttagtaaacaaggataacagaggagtatgaatctcctat- |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
53657586 |
tcctctctcagttccttcatctatgctaatggactgtccatacggcgtcgttcccacgttttagtaaacaaggataacagaggagtatgattctcctata |
53657685 |
T |
|
| Q |
300 |
----------aatgtgttagaataattagtgatgatgattctgtgggaaccgttgattattttgtttttattgctaattaaaagttcagataagttgagt |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53657686 |
ctatggtttcaatgtgttagaataattagtgatgatgattctgtgggaaccgttgattattttgtttttattgctaattaaaagttcagataagttgagt |
53657785 |
T |
|
| Q |
390 |
ccctcagatacatcaatgatcagagacaaagatatt |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
53657786 |
ccctcagatacatcaatgatcagagacaaagatatt |
53657821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 29430471 - 29430561
Alignment:
| Q |
1 |
ggagcaacacaattatgtggaatggatcgtgaagcgagggttatgaggtacagagagaaaaggaagaaccgaaaattcgagaagactattc |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
29430471 |
ggagcaacacaattatgtggaatggatcgtgaagcgagggttatgaggtacagagagaagaggaagaactgaaaattcgagaagactattc |
29430561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 48759467 - 48759584
Alignment:
| Q |
23 |
tggatcgtgaagcgagggttatgaggtacagagagaaaaggaagaaccgaaaattcgagaagactattcgttacgcttcacgaaaagcttatgcagaaac |
122 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| |||||||| |||| |||||||||||| |||||||| ||||| || ||||||||||| ||||| |
|
|
| T |
48759467 |
tggatcgtgaagctagggttatgaggtacagggagaagaggaagaatcgaagattcgagaagacaattcgttatgcttctcgtaaagcttatgcggaaac |
48759566 |
T |
|
| Q |
123 |
ccggcctagaattaaagg |
140 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
48759567 |
taggcctaggattaaagg |
48759584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 3420035 - 3419926
Alignment:
| Q |
31 |
gaagcgagggttatgaggtacagagagaaaaggaagaaccgaaaattcgagaagactattcgttacgcttcacgaaaagcttatgcagaaacccggccta |
130 |
Q |
| |
|
||||| ||||||||||||||||||||||| || ||||| ||| |||||||||||||||||| |||||||| ||||||||||||||||||| | |||| |
|
|
| T |
3420035 |
gaagctagggttatgaggtacagagagaagagaaagaatagaagattcgagaagactattcgctacgcttcgagaaaagcttatgcagaaactagaccta |
3419936 |
T |
|
| Q |
131 |
gaattaaagg |
140 |
Q |
| |
|
|||||||||| |
|
|
| T |
3419935 |
gaattaaagg |
3419926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University