View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9706_low_18 (Length: 408)

Name: NF9706_low_18
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9706_low_18
NF9706_low_18
[»] chr4 (12 HSPs)
chr4 (16-175)||(2622111-2622270)
chr4 (334-408)||(2622338-2622412)
chr4 (97-169)||(2466426-2466499)
chr4 (122-170)||(19140073-19140121)
chr4 (375-406)||(5609315-5609346)
chr4 (375-406)||(9517754-9517785)
chr4 (375-406)||(34844871-34844902)
chr4 (375-406)||(37109335-37109366)
chr4 (375-406)||(40058965-40058996)
chr4 (375-406)||(49287911-49287942)
chr4 (373-406)||(7949436-7949469)
chr4 (374-406)||(19680771-19680803)
[»] chr7 (8 HSPs)
chr7 (373-406)||(21558189-21558222)
chr7 (370-406)||(4566407-4566443)
chr7 (122-170)||(13901181-13901229)
chr7 (375-406)||(26459394-26459425)
chr7 (375-406)||(41907626-41907657)
chr7 (122-160)||(13575270-13575308)
chr7 (373-406)||(30579396-30579429)
chr7 (375-403)||(25655212-25655240)
[»] chr3 (6 HSPs)
chr3 (374-406)||(10969900-10969932)
chr3 (375-406)||(28703388-28703419)
chr3 (375-406)||(53234023-53234054)
chr3 (378-406)||(16354879-16354907)
chr3 (369-405)||(17155056-17155092)
chr3 (370-406)||(52455757-52455793)
[»] chr2 (7 HSPs)
chr2 (122-170)||(24550522-24550570)
chr2 (375-406)||(19244170-19244201)
chr2 (375-406)||(40416374-40416405)
chr2 (375-406)||(42922476-42922507)
chr2 (373-406)||(37971956-37971989)
chr2 (367-399)||(15954035-15954067)
chr2 (374-406)||(33569841-33569873)
[»] chr1 (12 HSPs)
chr1 (374-406)||(29753710-29753742)
chr1 (374-406)||(33700756-33700788)
chr1 (375-406)||(2799923-2799954)
chr1 (373-408)||(6650654-6650689)
chr1 (375-406)||(8077700-8077731)
chr1 (375-406)||(9500468-9500499)
chr1 (375-406)||(15059515-15059546)
chr1 (375-406)||(18646906-18646937)
chr1 (375-406)||(40810528-40810559)
chr1 (122-160)||(23966163-23966201)
chr1 (374-408)||(28283590-28283624)
chr1 (375-403)||(8177166-8177194)
[»] scaffold0238 (1 HSPs)
scaffold0238 (375-406)||(2695-2726)
[»] chr8 (6 HSPs)
chr8 (375-406)||(18540359-18540390)
chr8 (375-406)||(33017275-33017306)
chr8 (373-406)||(6536581-6536614)
chr8 (370-403)||(13129732-13129765)
chr8 (374-406)||(8794328-8794360)
chr8 (374-406)||(35690047-35690079)
[»] chr6 (3 HSPs)
chr6 (375-406)||(11306158-11306189)
chr6 (375-406)||(11448924-11448955)
chr6 (370-406)||(14212945-14212981)
[»] chr5 (6 HSPs)
chr5 (375-406)||(14285222-14285253)
chr5 (373-408)||(21589347-21589382)
chr5 (370-405)||(29075843-29075878)
chr5 (374-405)||(31074294-31074325)
chr5 (373-406)||(16773868-16773901)
chr5 (370-406)||(13038562-13038598)
[»] scaffold0070 (1 HSPs)
scaffold0070 (374-406)||(42503-42535)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 2622111 - 2622270
Alignment:
Q  16 gacatcagacaacataatactactatgcttttaagctcgaagagcatacaaagtaaaactgatgtaagagtctttaaatcggctccttagatgcaaatcg 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2622111 gacattagacaacataatactactatgcttttaagctcgaagagcgtacaaagtaaaactgatgtaagagtctttaaatcggctccttagatgcaaatcg 2622210  T
Q  116 gaagtaaaacaaaattcaagttcaagtctataacaatcatgagcacattggatactattt 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2622211 gaagtaaaacaaaattcaagttcaagtctataacaatcatgagcacattggatactattt 2622270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 334 - 408
Target Start/End: Original strand, 2622338 - 2622412
Alignment:
Q  334 tgttacatttaagatcaagcattgaggaggcaaattcatctaaattggcaccagagagaatcgaacctgagacat 408  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2622338 tgttacatttaagatcaagcattgaggaggcaaatttatctaaattggcaccagagagaatcgaacctgagacat 2622412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 2466499 - 2466426
Alignment:
Q  97 gctccttagatgcaaatcggaagtaaaacaaaattcaa-gttcaagtctataacaatcatgagcacattggata 169  Q
    ||||||||||||||||| | | |||||||| ||||||| ||||||||||||||||| ||||| ||| |||||||    
T  2466499 gctccttagatgcaaattgcatgtaaaacagaattcaaagttcaagtctataacaaacatgaacacgttggata 2466426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 19140121 - 19140073
Alignment:
Q  122 aaacaaaattcaagttcaagtctataacaatcatgagcacattggatac 170  Q
    |||||||||| ||||||||||||||||||| ||||||||  ||||||||    
T  19140121 aaacaaaattaaagttcaagtctataacaaacatgagcatgttggatac 19140073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Original strand, 5609315 - 5609346
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  5609315 aaattggcaccagagagaatcgaacctgagac 5609346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Original strand, 9517754 - 9517785
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  9517754 aaattggcaccagagagaatcgaacctgagac 9517785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Original strand, 34844871 - 34844902
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  34844871 aaattggcaccagagagaatcgaacctgagac 34844902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Original strand, 37109335 - 37109366
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  37109335 aaattggcaccagagagaatcgaacctgagac 37109366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Original strand, 40058965 - 40058996
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  40058965 aaattggcaccagagagaatcgaacctgagac 40058996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Complemental strand, 49287942 - 49287911
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  49287942 aaattggcaccagagagaatcgaacctgagac 49287911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 406
Target Start/End: Original strand, 7949436 - 7949469
Alignment:
Q  373 ctaaattggcaccagagagaatcgaacctgagac 406  Q
    |||||||| |||||||||||||||||||||||||    
T  7949436 ctaaattgacaccagagagaatcgaacctgagac 7949469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 19680771 - 19680803
Alignment:
Q  374 taaattggcaccagagagaatcgaacctgagac 406  Q
    |||||||||||||||||||||||||||| ||||    
T  19680771 taaattggcaccagagagaatcgaacctaagac 19680803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 406
Target Start/End: Complemental strand, 21558222 - 21558189
Alignment:
Q  373 ctaaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||||    
T  21558222 ctaaattggcaccagagagaatcgaacctgagac 21558189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 4566407 - 4566443
Alignment:
Q  370 catctaaattggcaccagagagaatcgaacctgagac 406  Q
    |||||||||||||||||||||||||| ||||||||||    
T  4566407 catctaaattggcaccagagagaatcaaacctgagac 4566443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 13901229 - 13901181
Alignment:
Q  122 aaacaaaattcaagttcaagtctataacaatcatgagcacattggatac 170  Q
    |||||||||| ||||||||||||||||||| ||||||||  ||||||||    
T  13901229 aaacaaaattaaagttcaagtctataacaaacatgagcatgttggatac 13901181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Original strand, 26459394 - 26459425
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  26459394 aaattggcaccagagagaatcgaacctgagac 26459425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Original strand, 41907626 - 41907657
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  41907626 aaattggcaccagagagaatcgaacctgagac 41907657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 13575308 - 13575270
Alignment:
Q  122 aaacaaaattcaagttcaagtctataacaatcatgagca 160  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  13575308 aaacaaaattaaagttcaagtctataacaaacatgagca 13575270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 406
Target Start/End: Complemental strand, 30579429 - 30579396
Alignment:
Q  373 ctaaattggcaccagagagaatcgaacctgagac 406  Q
    |||||||||||||||||| |||||||||||||||    
T  30579429 ctaaattggcaccagagaaaatcgaacctgagac 30579396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 403
Target Start/End: Original strand, 25655212 - 25655240
Alignment:
Q  375 aaattggcaccagagagaatcgaacctga 403  Q
    |||||||||||||||||||||||||||||    
T  25655212 aaattggcaccagagagaatcgaacctga 25655240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 10969900 - 10969932
Alignment:
Q  374 taaattggcaccagagagaatcgaacctgagac 406  Q
    |||||||||||||||||||||||||||||||||    
T  10969900 taaattggcaccagagagaatcgaacctgagac 10969932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Original strand, 28703388 - 28703419
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  28703388 aaattggcaccagagagaatcgaacctgagac 28703419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Original strand, 53234023 - 53234054
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  53234023 aaattggcaccagagagaatcgaacctgagac 53234054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 406
Target Start/End: Original strand, 16354879 - 16354907
Alignment:
Q  378 ttggcaccagagagaatcgaacctgagac 406  Q
    |||||||||||||||||||||||||||||    
T  16354879 ttggcaccagagagaatcgaacctgagac 16354907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 17155056 - 17155092
Alignment:
Q  369 tcatctaaattggcaccagagagaatcgaacctgaga 405  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  17155056 tcatccaaattggcaccagagagaatcgaatctgaga 17155092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 52455757 - 52455793
Alignment:
Q  370 catctaaattggcaccagagagaatcgaacctgagac 406  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  52455757 catcaaaattggcaccagagggaatcgaacctgagac 52455793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 24550522 - 24550570
Alignment:
Q  122 aaacaaaattcaagttcaagtctataacaatcatgagcacattggatac 170  Q
    |||||||||| ||||||||||||||||||| ||||||||  ||||||||    
T  24550522 aaacaaaattaaagttcaagtctataacaaacatgagcatgttggatac 24550570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Complemental strand, 19244201 - 19244170
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  19244201 aaattggcaccagagagaatcgaacctgagac 19244170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Original strand, 40416374 - 40416405
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  40416374 aaattggcaccagagagaatcgaacctgagac 40416405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Complemental strand, 42922507 - 42922476
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  42922507 aaattggcaccagagagaatcgaacctgagac 42922476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 406
Target Start/End: Complemental strand, 37971989 - 37971956
Alignment:
Q  373 ctaaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||| ||||||||||||||||||||    
T  37971989 ctaaattggcaccggagagaatcgaacctgagac 37971956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 399
Target Start/End: Complemental strand, 15954067 - 15954035
Alignment:
Q  367 attcatctaaattggcaccagagagaatcgaac 399  Q
    ||||||| |||||||||||||||||||||||||    
T  15954067 attcatcaaaattggcaccagagagaatcgaac 15954035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 33569841 - 33569873
Alignment:
Q  374 taaattggcaccagagagaatcgaacctgagac 406  Q
    |||||| ||||||||||||||||||||||||||    
T  33569841 taaattagcaccagagagaatcgaacctgagac 33569873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 29753742 - 29753710
Alignment:
Q  374 taaattggcaccagagagaatcgaacctgagac 406  Q
    |||||||||||||||||||||||||||||||||    
T  29753742 taaattggcaccagagagaatcgaacctgagac 29753710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 33700756 - 33700788
Alignment:
Q  374 taaattggcaccagagagaatcgaacctgagac 406  Q
    |||||||||||||||||||||||||||||||||    
T  33700756 taaattggcaccagagagaatcgaacctgagac 33700788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Complemental strand, 2799954 - 2799923
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  2799954 aaattggcaccagagagaatcgaacctgagac 2799923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 373 - 408
Target Start/End: Complemental strand, 6650689 - 6650654
Alignment:
Q  373 ctaaattggcaccagagagaatcgaacctgagacat 408  Q
    |||||||| |||||||||||||||||||||||||||    
T  6650689 ctaaattgacaccagagagaatcgaacctgagacat 6650654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Complemental strand, 8077731 - 8077700
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  8077731 aaattggcaccagagagaatcgaacctgagac 8077700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Original strand, 9500468 - 9500499
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  9500468 aaattggcaccagagagaatcgaacctgagac 9500499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Original strand, 15059515 - 15059546
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  15059515 aaattggcaccagagagaatcgaacctgagac 15059546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Complemental strand, 18646937 - 18646906
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  18646937 aaattggcaccagagagaatcgaacctgagac 18646906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Complemental strand, 40810559 - 40810528
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  40810559 aaattggcaccagagagaatcgaacctgagac 40810528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 23966201 - 23966163
Alignment:
Q  122 aaacaaaattcaagttcaagtctataacaatcatgagca 160  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  23966201 aaacaaaattaaagttcaagtctataacaaacatgagca 23966163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 408
Target Start/End: Complemental strand, 28283624 - 28283590
Alignment:
Q  374 taaattggcaccagagagaatcgaacctgagacat 408  Q
    ||||||| |||||||||||||||||||||||||||    
T  28283624 taaattgacaccagagagaatcgaacctgagacat 28283590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 403
Target Start/End: Original strand, 8177166 - 8177194
Alignment:
Q  375 aaattggcaccagagagaatcgaacctga 403  Q
    |||||||||||||||||||||||||||||    
T  8177166 aaattggcaccagagagaatcgaacctga 8177194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Original strand, 2695 - 2726
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  2695 aaattggcaccagagagaatcgaacctgagac 2726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Complemental strand, 18540390 - 18540359
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  18540390 aaattggcaccagagagaatcgaacctgagac 18540359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Complemental strand, 33017306 - 33017275
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  33017306 aaattggcaccagagagaatcgaacctgagac 33017275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 406
Target Start/End: Complemental strand, 6536614 - 6536581
Alignment:
Q  373 ctaaattggcaccagagagaatcgaacctgagac 406  Q
    |||||||||||||||||||||| |||||||||||    
T  6536614 ctaaattggcaccagagagaattgaacctgagac 6536581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 13129765 - 13129732
Alignment:
Q  370 catctaaattggcaccagagagaatcgaacctga 403  Q
    |||| |||||||||||||||||||||||||||||    
T  13129765 catccaaattggcaccagagagaatcgaacctga 13129732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 8794328 - 8794360
Alignment:
Q  374 taaattggcaccagagagaatcgaacctgagac 406  Q
    |||||||| ||||||||||||||||||||||||    
T  8794328 taaattggtaccagagagaatcgaacctgagac 8794360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 35690047 - 35690079
Alignment:
Q  374 taaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||| |||||||||||||||||||||||||    
T  35690047 taaattgacaccagagagaatcgaacctgagac 35690079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Original strand, 11306158 - 11306189
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  11306158 aaattggcaccagagagaatcgaacctgagac 11306189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Complemental strand, 11448955 - 11448924
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  11448955 aaattggcaccagagagaatcgaacctgagac 11448924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 14212981 - 14212945
Alignment:
Q  370 catctaaattggcaccagagagaatcgaacctgagac 406  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  14212981 catcaaaattggcaccagagggaatcgaacctgagac 14212945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Complemental strand, 14285253 - 14285222
Alignment:
Q  375 aaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||||||||||||||||||||||    
T  14285253 aaattggcaccagagagaatcgaacctgagac 14285222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 373 - 408
Target Start/End: Complemental strand, 21589382 - 21589347
Alignment:
Q  373 ctaaattggcaccagagagaatcgaacctgagacat 408  Q
    ||||||||||||||||| ||||||||||||||||||    
T  21589382 ctaaattggcaccagagggaatcgaacctgagacat 21589347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 370 - 405
Target Start/End: Complemental strand, 29075878 - 29075843
Alignment:
Q  370 catctaaattggcaccagagagaatcgaacctgaga 405  Q
    |||||||||||||||||||||||||||||| |||||    
T  29075878 catctaaattggcaccagagagaatcgaacatgaga 29075843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 374 - 405
Target Start/End: Complemental strand, 31074325 - 31074294
Alignment:
Q  374 taaattggcaccagagagaatcgaacctgaga 405  Q
    ||||||||||||||||||||||||||||||||    
T  31074325 taaattggcaccagagagaatcgaacctgaga 31074294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 406
Target Start/End: Complemental strand, 16773901 - 16773868
Alignment:
Q  373 ctaaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||| ||||||||||||||||||||||    
T  16773901 ctaaattggcatcagagagaatcgaacctgagac 16773868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 13038562 - 13038598
Alignment:
Q  370 catctaaattggcaccagagagaatcgaacctgagac 406  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  13038562 catcaaaattggcaccagagggaatcgaacctgagac 13038598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 42503 - 42535
Alignment:
Q  374 taaattggcaccagagagaatcgaacctgagac 406  Q
    ||||||||||||| |||||||||||||||||||    
T  42503 taaattggcaccaaagagaatcgaacctgagac 42535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University