View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9706_low_20 (Length: 379)
Name: NF9706_low_20
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 160 - 364
Target Start/End: Complemental strand, 29856527 - 29856323
Alignment:
| Q |
160 |
ggaagttgaattagtagtattttactatttttgtgtggagcgaataactaatcttattttggttcatttttgtgtgtaggaaggtgaatttttctccaag |
259 |
Q |
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| T |
29856527 |
ggaagttgaattagtagtattttactatttttgtgtggagcgaataactaatcttattttggttcatttttgtgtgtaggaaggtgaatttttctccaag |
29856428 |
T |
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| Q |
260 |
aatggatttccaaagtcaccattccctaatggttggaaaggaactgttggactttatgctgttgggtttacaaagagagggctctctggttcttcatatg |
359 |
Q |
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| T |
29856427 |
aatggatttccaaagtcaccattccctaatggttggaaaggaactgttggactttatgctgttgggtttacaaagagagggctctctggttcttcatatg |
29856328 |
T |
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| Q |
360 |
atgct |
364 |
Q |
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||||| |
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| T |
29856327 |
atgct |
29856323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 29856677 - 29856583
Alignment:
| Q |
11 |
cataggtcttgcaaatttgatgtttggttcggttttgaaacc-nnnnnnngggtcttatcggatgtttctctttattcttccaatacataaaata |
104 |
Q |
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| T |
29856677 |
cataggtcttgcaaatttgatgtttggttcggttttgaaaccttttttttgggtctcatcggatgtttctctttattcttccaatacataaaata |
29856583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 356
Target Start/End: Original strand, 17408923 - 17409001
Alignment:
| Q |
278 |
ccattccctaatggttggaaaggaactgttggactttatgctgttgggtttacaaagagagggctctctggttcttcat |
356 |
Q |
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| T |
17408923 |
ccatttccaaatggatggaaaggaaatgctggtctatatgctgttggatttacaaggagaggactctctggtgcttcat |
17409001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 237 - 365
Target Start/End: Complemental strand, 39732560 - 39732432
Alignment:
| Q |
237 |
aggaaggtgaatttttctccaagaatggatttccaaagtcaccattccctaatggttggaaaggaactgttggactttatgctgttgggtttacaaagag |
336 |
Q |
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| T |
39732560 |
aggaaggtgaatttttctcaaaaaatggatacccaaagatgccatttccacatggttggaagggaaattcaggactttatgctgtagggttcacaaagag |
39732461 |
T |
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| Q |
337 |
agggctctctggttcttcatatgatgctg |
365 |
Q |
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| T |
39732460 |
agggctttctggtgcttcatctgatgctg |
39732432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 237 - 365
Target Start/End: Original strand, 39840401 - 39840529
Alignment:
| Q |
237 |
aggaaggtgaatttttctccaagaatggatttccaaagtcaccattccctaatggttggaaaggaactgttggactttatgctgttgggtttacaaagag |
336 |
Q |
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||||||||||||||||||| || ||||||| |||||| ||||| || |||||||||| |||| | |||||||||||||| ||||| |||||||| |
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| T |
39840401 |
aggaaggtgaatttttctcaaaaaatggatacccaaagatgccatttccacatggttggaagggaaattcaggactttatgctgtagggttcacaaagag |
39840500 |
T |
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| Q |
337 |
agggctctctggttcttcatatgatgctg |
365 |
Q |
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|||||| |||||| |||||| |||||||| |
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| T |
39840501 |
agggctttctggtgcttcatctgatgctg |
39840529 |
T |
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