View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9706_low_21 (Length: 370)
Name: NF9706_low_21
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 9166491 - 9166834
Alignment:
| Q |
1 |
ttttcctattattcatcttctcttctgcttcctccaaagttaactgcttatactgcgcaactttgttaaagttgtacctaaataacagcatgcggaactt |
100 |
Q |
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| T |
9166491 |
ttttcctattattcatcttctcttctgcttcctccaaagttaattgcttatactgcgcaactttgttaaagttgtacctaaataacagcatgcggaactt |
9166590 |
T |
|
| Q |
101 |
tgtatcatcctactgtcattgagcagtaataaacacagataagaaaataaagagcaaagttatttccacgaacacaatccttaacaagcataccaggatc |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9166591 |
tgtatcatcctactgtcattgaacagtaataaacacagataagaaaataaagagcaaagttatttccacgaacacaatccttaacaagcataccaggatc |
9166690 |
T |
|
| Q |
201 |
caacaggaatggcaataaactccttctttcccttcataagcaggtaatatgtagctgattgtgaaccttctagatgaccctgaaattgggactgacctgt |
300 |
Q |
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| T |
9166691 |
caacaggaatggcaataaactacttctttcccttcataagcaggtaatatgtagctgattgtgaaccttctagatgaccctgaaattgggactgacctgt |
9166790 |
T |
|
| Q |
301 |
ttcatcttccaagagccaaggcctgttcttgtacttctcctatg |
344 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9166791 |
ttcatcttccaagaaccaaggcctgttcttgtacttctcctatg |
9166834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 9155074 - 9155415
Alignment:
| Q |
1 |
ttttcctattattcatcttctcttctgcttcctccaaagttaactgcttatactgcgcaactttgttaaagttgtacctaaataacagcatgcggaactt |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| ||||| || |||||||| || ||||| |||||||||||||||||| | || ||||||| ||||| |
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| T |
9155074 |
ttttcctatttttcatcttctcttctgcttcctctaaagtcaattgcttatattgtgcaaccttgttaaagttgtacctacaaaaaagcatgccaaactt |
9155173 |
T |
|
| Q |
101 |
tgtatcatcctactgtcattgagcagtaataaacacagataagaaaataaagagcaaagttatttccacgaacacaatccttaacaagcataccaggatc |
200 |
Q |
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|| |||||||||||||| ||||||||||| ||||||||||||||||| |||| ||| ||||| |||||||||||||||||||||||||||| | |
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| T |
9155174 |
tgcatcatcctactgtctttgagcagtaacaaacacagataagaaaaggaagataaaacca---tccactaacacaatccttaacaagcataccaggaac |
9155270 |
T |
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| Q |
201 |
caacaggaatggcaataaactccttctttcccttcataagcaggtaatatgtagctgattgtgaaccttctagatgaccctgaaattgggactgacctgt |
300 |
Q |
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|| |||||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
9155271 |
cagcaggaatggcaacaaactccttcttttccttcattagcaggtaatacgtagctgattgtgaaccttcaagatgaccctgaaactgggactgacctgt |
9155370 |
T |
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| Q |
301 |
ttcatcttccaagagccaaggcctgttcttgtacttctcctatgc |
345 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9155371 |
ttcatcctccaagagccaaggcctgttcttgtacttctcctatgc |
9155415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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