View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9706_low_22 (Length: 367)
Name: NF9706_low_22
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 160 - 359
Target Start/End: Original strand, 24052311 - 24052517
Alignment:
| Q |
160 |
gaccttgatatttgaactgtcagatctcgatcagacaactttgatctcgctgaatacacacaatcatgact-------acacccaatctcaaacccaaaa |
252 |
Q |
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| T |
24052311 |
gaccttgatatttgaactgtcagatctcgatcagacaactttgatcttgctgaatacacacaatcatgactgaagactacacccaatctcaaacccaaaa |
24052410 |
T |
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| Q |
253 |
ccttaaataaaacaaaagcctcaaaagtaaagtcattgtctaagcgtctcttcgtgctttccaccctaagaacatgtctatgatacctaaatctaatgtc |
352 |
Q |
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| T |
24052411 |
ccttaaataaaacaaaagcctcaaaagtaaagtcattgtctaaacgtctcttcgtgctttccaccctaagaacatgtctctgatacctaaatctaatgtc |
24052510 |
T |
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| Q |
353 |
ccccttt |
359 |
Q |
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||||||| |
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| T |
24052511 |
ccccttt |
24052517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 24052167 - 24052270
Alignment:
| Q |
15 |
taagtgtcctacctggcataaaaaatagattgagtgcagtcgccctacatacaatcaatttgcaatcaacaactcacaatcgttagttcaaaatcaattg |
114 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | || |
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| T |
24052167 |
taagtgtcctacatggcataaaa-atagattgagtgcagtcgccctacatacaatcaaattgcaatcaacaactcacaatcgttagttcaaaatcgaatg |
24052265 |
T |
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| Q |
115 |
actat |
119 |
Q |
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||||| |
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| T |
24052266 |
actat |
24052270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 232 - 341
Target Start/End: Original strand, 36492034 - 36492142
Alignment:
| Q |
232 |
cacccaatctcaaacccaaaaccttaaataaaacaaaagcctcaaaagtaaagtcattgtctaagcgtctcttcgtgctttccaccctaagaacatgtct |
331 |
Q |
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| T |
36492034 |
cacccaatctcaaactcaaaaccttaaataaaacaaaaacctcaaaa-taaagtcattgtctaagcgtctcattgtactttctaccataagaccatgtct |
36492132 |
T |
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| Q |
332 |
atgataccta |
341 |
Q |
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||| ||||| |
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| T |
36492133 |
ctgacaccta |
36492142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 36484282 - 36484363
Alignment:
| Q |
249 |
aaaaccttaaataaaacaaaagcctcaaaagtaaagtcattgtctaagcgtctcttcgtgctttccaccctaagaacatgtct |
331 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||| |||| | || |||| || ||||||| ||||||| |
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| T |
36484282 |
aaaaccttaaataaaacaaaagcctc-agagtaaagtcattgtctaagcatctccttgtacttttcatcctaagaccatgtct |
36484363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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