View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9706_low_25 (Length: 336)
Name: NF9706_low_25
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_low_25 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 6889562 - 6889872
Alignment:
| Q |
19 |
tccacctcttatacttgatccaaaccaagattcacaccggctcccccaccaagttgaaccagt-tttaataccacttgatggatggagaggtcatgggag |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| || ||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6889562 |
tccacctcttatacttgatttgaaccaagatccactcctgctcccccaccaagtcgaaccagtctttaataccaattgatggatggagaggtcatgggag |
6889661 |
T |
|
| Q |
118 |
cgacaagagcaacaacgaaccaatacttcagaagcataagagagggagacccatagcttcatcctaaactttatgacattag--atatatgtgcaatctt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
6889662 |
cgacaagagcaacaacgaaccaatacttcagaagcataagagagggagactcatagcttcatcctaaactttatgacattagatatatatgtgtaatctt |
6889761 |
T |
|
| Q |
216 |
atttatattcaacattttacttattcataagcgatgtgctaaccgcgtacatttgaacccatcaatttgaatagccaccgagaataagttcatcccgacc |
315 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||||||| ||||||| |
|
|
| T |
6889762 |
atttatattcaacattttactcattcataaacgatgtgttaaccgcgtacctttgaacccatcaatttaaatagccacgcagaataagttcaccccgacc |
6889861 |
T |
|
| Q |
316 |
tacatcctatg |
326 |
Q |
| |
|
||||||||||| |
|
|
| T |
6889862 |
tacatcctatg |
6889872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University