View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9706_low_26 (Length: 334)
Name: NF9706_low_26
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 24506539 - 24506443
Alignment:
| Q |
11 |
cagagaagaataaggcacttgatgccaacacaaaattaatccttcctagcgcatgcttcaaaacctgcacaatttacattcaactcacacaaccaac |
107 |
Q |
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| T |
24506539 |
cagagaagaataaggcacttgatgccaacacaaaattaatccttcctagcgcatgcttcaaaacctgcacaatttacattcaactcacacaatcaac |
24506443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 183 - 308
Target Start/End: Complemental strand, 24518013 - 24517888
Alignment:
| Q |
183 |
atcatctcccttgatcttgtaagcgaggaagagttagtcaaccagtcatcataacataccaaaaacttgcaaaaggggagaaccttagctcgaagaatat |
282 |
Q |
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| T |
24518013 |
atcatctaccttgatcatgtaacagaggaagagttagtcaaccaattttcataatataccaaaaaattccataaggagagaaccttagcttgcagaatat |
24517914 |
T |
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| Q |
283 |
ggtagctttgtgattacatatgcatg |
308 |
Q |
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| T |
24517913 |
ggtagctttgtgattacatatgcatg |
24517888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 24518145 - 24518089
Alignment:
| Q |
50 |
tccttcctagcgcatgcttcaaaacctgcacaatttacattcaactcacacaaccaa |
106 |
Q |
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| T |
24518145 |
tcctttctagcacatgcttcaaaccctacataatttacattcaactcatacaaccaa |
24518089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 222 - 308
Target Start/End: Complemental strand, 35456099 - 35456013
Alignment:
| Q |
222 |
aaccagtcatcataacataccaaaaacttgcaaaaggggagaaccttagctcgaagaatatggtagctttgtgattacatatgcatg |
308 |
Q |
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| T |
35456099 |
aaccagtcttcataacataccaaaaacttgcataaggagataaccttagctagcagaatatggtagctttgtgattacagatgcatg |
35456013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 35456210 - 35456163
Alignment:
| Q |
62 |
catgcttcaaaacctgcacaatttacattcaactcacacaaccaactg |
109 |
Q |
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| T |
35456210 |
catgattcaaaacctgcacaatttacattcaattcacacaaccaactg |
35456163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 29082286 - 29082248
Alignment:
| Q |
63 |
atgcttcaaaacctgcacaatttacattcaactcacaca |
101 |
Q |
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| T |
29082286 |
atgcttcaaaacctgcacaatttacattcaactcacaca |
29082248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 29082173 - 29082101
Alignment:
| Q |
183 |
atcatctcccttgatcttgtaagcgaggaagagttagtcaaccagtcatcataacataccaaaaacttgcaaa |
255 |
Q |
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| T |
29082173 |
atcatctcccatgagcctgtaacagaggaagagttagtaaaccagtcttcctaagattccaaaaacttgcaaa |
29082101 |
T |
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