View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9706_low_27 (Length: 329)

Name: NF9706_low_27
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9706_low_27
NF9706_low_27
[»] chr7 (2 HSPs)
chr7 (18-309)||(7338751-7339044)
chr7 (56-175)||(7338600-7338719)
[»] chr1 (1 HSPs)
chr1 (42-204)||(24501491-24501657)
[»] chr8 (4 HSPs)
chr8 (56-204)||(24749518-24749668)
chr8 (203-318)||(24747523-24747638)
chr8 (121-202)||(43580186-43580268)
chr8 (77-111)||(43580161-43580195)
[»] chr5 (3 HSPs)
chr5 (77-204)||(21011335-21011464)
chr5 (209-318)||(21009358-21009467)
chr5 (82-189)||(30253956-30254065)
[»] chr6 (2 HSPs)
chr6 (203-318)||(26448987-26449102)
chr6 (56-204)||(26446957-26447106)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 7339044 - 7338751
Alignment:
Q  18 atttcgtatatgaaactcgtgttctaaggttgatttcatcttcttt---gcgaatatgaaactcatgtttgttatgattagggtttcgaaattttgccag 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  7339044 atttcgtatatgaaactcgtgttctaaggttgatttcatcttcttcttcgcgaatatgaaactcatgtttgttat-attagggtttcgaaattttgctag 7338946  T
Q  115 ggtattgaaaattttctagggttttgcagatttgaatgatttttgtacgttttaaggttctgatgcatggatttgatactttattgtattctctaggtca 214  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| | |||||||||||||||||||    
T  7338945 ggtattgaaaaatttatagggttttgcagatttgaatgatttttgtatgttttaaggttctaatgcatggatttgatattctattgtattctctaggtca 7338846  T
Q  215 acctcaataccttcttatggggttgatataatcttgacagttgaatgagggttagatcttagtaattcatgaacataattatgcagccttgtgta 309  Q
     ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||    
T  7338845 gcctcagtaccttcttatggggttgatataatattgacagttgaatgagggttagaccttagtaattcatgagcataatcatgcagccttgtgta 7338751  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 7338600 - 7338719
Alignment:
Q  56 tcttctttgcgaatatgaaactcatgtttgttatgattagggtttcgaaattttgccagggtattgaaaattttctagggttttgcagatttgaatgatt 155  Q
    ||||||| | |||||||||||||||||||||| | |||| |||||| ||||||||| ||||||||||||| ||||||| |||||||||||||||||||||    
T  7338600 tcttcttcgtgaatatgaaactcatgtttgttctaattaaggtttcaaaattttgctagggtattgaaaaatttctagtgttttgcagatttgaatgatt 7338699  T
Q  156 tttgtacgttttaaggttct 175  Q
    ||||||||||| ||||||||    
T  7338700 tttgtacgtttaaaggttct 7338719  T

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Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 24501657 - 24501491
Alignment:
Q  42 taaggttgatttcatcttcttt---gcgaatatgaaactcatgtttgttatgattagggtttcgaaattttgccagggtattgaaaattttctagggttt 138  Q
    |||||||||||||||||||||    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  24501657 taaggttgatttcatcttcttcttcgcgaatatgaaactcatgtttgttctgattagggtttcgaaaatttgccagggtattgaaaaatttctagggttt 24501558  T
Q  139 tgcagatttgaatgatttttgtacgttttaaggttc-tgatgcatggatttgatactttattgtatt 204  Q
    | || |||||| |||| ||||||||||||||||||| |  ||||||||||||||| | |||||||||    
T  24501557 tacatatttgagtgatatttgtacgttttaaggttcttcctgcatggatttgatattctattgtatt 24501491  T

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Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 56 - 204
Target Start/End: Complemental strand, 24749668 - 24749518
Alignment:
Q  56 tcttctttgcgaatatgaaactcatgtttgttatgattagggtttcgaaattttgccagggtattg-aaaattttctagggttttgcagatttgaatgat 154  Q
    ||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||  ||||| ||| |||| |||||||||||||||||||| | |||||    
T  24749668 tcttcttcgcgaatatgatactcatgtttgttctgattagggtttcgaaattttgatagggttttgaaaaaatttctagggttttgcagattgggatgat 24749569  T
Q  155 ttttgtacgttttaaggttctg-atgcatggatttgatactttattgtatt 204  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  24749568 ttttgtacgttttaaggttctgtatgcatggatttgatattttattgtatt 24749518  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 203 - 318
Target Start/End: Original strand, 24747523 - 24747638
Alignment:
Q  203 ttctctaggtcaacctcaataccttcttatggggttgatataatcttgacagttgaatgagggttagatcttagtaattcatgaacataattatgcagcc 302  Q
    |||||||||||| ||||| ||||||| || ||||||||| |||| ||||||| ||||||||||||||| ||||||||||||||  |||||| ||||| ||    
T  24747523 ttctctaggtcagcctcagtaccttcataaggggttgatgtaattttgacagatgaatgagggttagaccttagtaattcatgtgcataatcatgcatcc 24747622  T
Q  303 ttgtgtattgatctct 318  Q
    ||||||||||||||||    
T  24747623 ttgtgtattgatctct 24747638  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 43580186 - 43580268
Alignment:
Q  121 gaaaattttctagggttttgcagatttgaatgatttttgtacgttttaaggttctg-atgcatggatttgatactttattgta 202  Q
    |||| ||| ||||||||||||||||| ||||||||| |||| |||||||||||||| |||||||||||||||| |||||||||    
T  43580186 gaaattttgctagggttttgcagattggaatgatttgtgtatgttttaaggttctgtatgcatggatttgatattttattgta 43580268  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 43580161 - 43580195
Alignment:
Q  77 tcatgtttgttatgattagggtttcgaaattttgc 111  Q
    ||||||||||| |||||||||||||||||||||||    
T  43580161 tcatgtttgttctgattagggtttcgaaattttgc 43580195  T

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Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 77 - 204
Target Start/End: Complemental strand, 21011464 - 21011335
Alignment:
Q  77 tcatgtttgttatgattagggtttcgaaattttgccagggtattgaaaat-tttctagggttttgcagatttgaatgatttttgtacgttttaaggttct 175  Q
    ||||||||||| ||||||||||||||||||||||| ||||| |||||||  ||| |||||||||||||||| | ||||||||||||||||||||||||||    
T  21011464 tcatgtttgttctgattagggtttcgaaattttgctagggttttgaaaaaatttgtagggttttgcagattgggatgatttttgtacgttttaaggttct 21011365  T
Q  176 g-atgcatggatttgatactttattgtatt 204  Q
    | |||||||||||||||| |||||||||||    
T  21011364 gtatgcatggatttgatattttattgtatt 21011335  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 209 - 318
Target Start/End: Original strand, 21009358 - 21009467
Alignment:
Q  209 aggtcaacctcaataccttcttatggggttgatataatcttgacagttgaatgagggttagatcttagtaattcatgaacataattatgcagccttgtgt 308  Q
    |||||| ||||| |||||||  | ||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| |||||| ||||||||||||||    
T  21009358 aggtcagcctcagtaccttcaaaaggggttgatgtaatcttgacagatgaatgagggttagaccttagtaattcatgagcataatcatgcagccttgtgt 21009457  T
Q  309 attgatctct 318  Q
    ||||||||||    
T  21009458 attgatctct 21009467  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 30253956 - 30254065
Alignment:
Q  82 tttgttatgattagggtttcgaaattttgccagggtatt-gaaaattttctagggttttgcagatttgaatga-tttttgtacgttttaaggttctg-at 178  Q
    |||||| |||||||||||| ||||  || | ||||| || ||||||||| |||||||||| | |||||||||| ||||| ||| ||||||||||||| ||    
T  30253956 tttgttctgattagggttttgaaaactttctagggttttggaaaattttatagggttttg-aaatttgaatgattttttttaccttttaaggttctgtat 30254054  T
Q  179 gcatggatttg 189  Q
    ||||| |||||    
T  30254055 gcatgaatttg 30254065  T

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Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 203 - 318
Target Start/End: Complemental strand, 26449102 - 26448987
Alignment:
Q  203 ttctctaggtcaacctcaataccttcttatggggttgatataatcttgacagttgaatgagggttagatcttagtaattcatgaacataattatgcagcc 302  Q
    |||||||||||| ||||| ||||||| || ||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| |||||| ||||||||    
T  26449102 ttctctaggtcagcctcagtaccttcataaggggttgatgtaatcttgacagatgaatgagggttagaccttagtaattcatgagcataatcatgcagcc 26449003  T
Q  303 ttgtgtattgatctct 318  Q
    ||||||||||||||||    
T  26449002 ttgtgtattgatctct 26448987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 56 - 204
Target Start/End: Original strand, 26446957 - 26447106
Alignment:
Q  56 tcttctttgcgaatatgaaactcatgtttgttatgattagggtttcgaaattttgccagggtattgaaaatt-ttctagggttttgcagatttgaatgat 154  Q
    |||||||  ||||||||| ||||||||||||| |||||||||||||||||||||   ||||| |||||||   || |||||||||||||||| | |||||    
T  26446957 tcttcttcacgaatatgatactcatgtttgttctgattagggtttcgaaattttat-agggttttgaaaaaaattttagggttttgcagattgggatgat 26447055  T
Q  155 ttttgtacgttttaaggttctg-atgcatggatttgatactttattgtatt 204  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  26447056 ttttgtacgttttaaggttctgtatgcatggatttgatattttattgtatt 26447106  T

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