View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9706_low_29 (Length: 307)

Name: NF9706_low_29
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9706_low_29
NF9706_low_29
[»] chr4 (1 HSPs)
chr4 (19-307)||(26754346-26754634)


Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 26754346 - 26754634
Alignment:
Q  19 ccctgcacacctcttgcttaatcctggaacttcgatcatgaagatttgtccatatacatattgttctctcaatggcaatcgacatgctcctttgcctcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  26754346 ccctgcacacctcttgcttaatcctggaacttcgatcatgaagatttgtccatctacatattgttctctcaatggcaatcaacatgctcctttgcctcaa 26754445  T
Q  119 tttaattgcatcatgtcagcaaagaatgaccttttgaagactcggaagactataaagatggaagtgcctcaaagactgaaggtgccttgtgagataagga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26754446 tttaattgcatcatgtcagcaaagaatgaccttttgaagactcggaagagtataaagatggaagtgcctcgaagactgaaggtgccttgtgagataagga 26754545  T
Q  219 aggattttgatattgagcagattgtctttaatgaagttgatgccatggaaagggaaaaggcatacgaaataggaagatcggacactgtc 307  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26754546 aggattttgatattgagcagattgtctttgatgaagttgatgccatggaaagggaaaaggcatacgaaatgggaagatcggacactgtc 26754634  T

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