View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9706_low_3 (Length: 588)
Name: NF9706_low_3
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 43782089 - 43781793
Alignment:
| Q |
1 |
tcaacaattttaaattaatttattttcctaattttaaattaacatacttctcttctgttttcctgattatgacttgaagacaaaacaaaactaacaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43782089 |
tcaacaattttaaattaatttattttcctaattttaaattaacatacttctcttctgttttcctgattatgacttgaagacaaaacaaaactaacacaca |
43781990 |
T |
|
| Q |
101 |
acatgagatgacaggcataagcaaaatttacaaaaacatggaccgtgaaattggataataagaatttaaatcatatggtaggtggaaacttgtctttacc |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43781989 |
acatgagatgaaaggcataagcaaaatttacaaaaacatggaccgtgaaattggataataagaatttaaatcatatggtaggtggaaacttgtctttacc |
43781890 |
T |
|
| Q |
201 |
agtttcagtatatttataaaaattataagcagaggttttataaaaattaagcaaagataataaatttcaggcgatttcaatgttgtccttgattttt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43781889 |
agtttcagtatatttataaaaattataagcagaggttttataaaaattaagcaaagatagtaaatttcaggcgatttcaatgttgtccttgattttt |
43781793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 321 - 570
Target Start/End: Complemental strand, 43781793 - 43781544
Alignment:
| Q |
321 |
ttgcaacacatgaatcaaaatggtccctctgttaagttcaaacggtagtcaacattcattgacacgataacgaagatgtgataatctatattgactccac |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43781793 |
ttgcaacacatgaatcaaaatggtccctctgttaagttcaaacggtagtcaacattcattgacacgataaagaagatgtgataatctatattgactccac |
43781694 |
T |
|
| Q |
421 |
atcactgccacgtctccagatacaaaatcgacatatataactttgactgaacaataaaagagaatgtaaaccatggaagctgaaagcttgaatttctaac |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43781693 |
atcactgccacgtctccagatacaaaatcgacatatataactttgactgaacaataaaagagaatgtaaaccatggaagctgaaagcttgaatttctaac |
43781594 |
T |
|
| Q |
521 |
ctgcaaagaatacctttgcacattgtaacctgcaacagcaacagccacag |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43781593 |
ctgcaaagaatacctttgcacattgtaacctgcaacagcaacagccacag |
43781544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 7e-35; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 15957679 - 15957552
Alignment:
| Q |
84 |
aacaaaactaacaaacaacatgagatgacaggcataagcaaaatttacaaaaacatggaccgtgaaattggataataagaatttaaatcatatggtaggt |
183 |
Q |
| |
|
|||||||||| || ||||||||| |||| | |||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||||||| || | |
|
|
| T |
15957679 |
aacaaaactatcacacaacatgatatgaaaagcataagcaaaattaacaaaaacatggaccgtgaaattggataaaagcaatttaattcatatggcagtt |
15957580 |
T |
|
| Q |
184 |
ggaaacttgtctttaccagtttcagtat |
211 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
15957579 |
ggaaatttgtctttaccagtttcagtat |
15957552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 15957744 - 15957691
Alignment:
| Q |
3 |
aacaattttaaattaatttattttcctaattttaaattaacatacttctcttct |
56 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
15957744 |
aacaattttaaattactttattttcctgattttaaatgaacatacttctcttct |
15957691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 464 - 569
Target Start/End: Complemental strand, 15957281 - 15957175
Alignment:
| Q |
464 |
tgactgaacaataaaagagaatgtaaaccatggaagctgaaa--gcttgaatttctaacctgcaaagaatacctttgcacattgtaacctgcaacagcaa |
561 |
Q |
| |
|
||||| ||||| |||| ||||| ||| |||||| | ||||| ||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||| |
|
|
| T |
15957281 |
tgacttaacaacaaaaaagaatataactcatggaggttgaaaaggcttgaatttctaacctgcaagcaatacctctgcacattgcaacc-gcaacagcaa |
15957183 |
T |
|
| Q |
562 |
cagccaca |
569 |
Q |
| |
|
|||||||| |
|
|
| T |
15957182 |
cagccaca |
15957175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 376
Target Start/End: Complemental strand, 15957464 - 15957371
Alignment:
| Q |
283 |
ttgtccttgatttttacgaaatagcatcattcctaaaattgcaacacatgaatcaaaatggtccctctgttaagttcaaacggtagtcaacatt |
376 |
Q |
| |
|
|||||||||| || ||| || |||| || ||||| ||| || ||||||| ||||||| |||||||| ||||||||||| | | ||| ||||||| |
|
|
| T |
15957464 |
ttgtccttgacttctacaaattagcttcgttcctgaaaatgtaacacatcaatcaaattggtccctttgttaagttcagatgttagacaacatt |
15957371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University