View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9706_low_30 (Length: 299)
Name: NF9706_low_30
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 48817390 - 48817669
Alignment:
| Q |
18 |
aacactgtgaccattgatctgaaagccaggaccttgaggttgatgactagcaagactatgctgttttggtccaaatggtggactttgttttgaaaccctg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48817390 |
aacactgtgaccattgatctgaaagccaggaccttgaggttgataactagcaagactatgctgttttggtccaaatggtggactttgttttgaaaccctg |
48817489 |
T |
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| Q |
118 |
taatcagtattctcagcagtaggcactgcttcaacatctctatcatggtactcaacaattttcattagactaagatcagccaccatggtgattccagtaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48817490 |
taatcagtattctcagcagtaggcactgcttcaacatctctatcatggtactcaacaattttcattagactaagatcagccaccatggtgattccagtaa |
48817589 |
T |
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| Q |
218 |
taggcctaacatatatattaacagtactttctttcataaaacagtcaactctcacagtccttctattctctgcttctcca |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48817590 |
taggcctaacatatatattaacagtactttctttcataaaacagtcaactctcacagtccttctattctctttttctcca |
48817669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 15827314 - 15827593
Alignment:
| Q |
18 |
aacactgtgaccattgatctgaaagccaggaccttgaggttgatgactagcaagactatgctgttttggtccaaatggtggactttgttttgaaaccctg |
117 |
Q |
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|||||| || ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| || | |
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| T |
15827314 |
aacactatggccattgatcaagaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtccaaatggaggtctttgttttgaagcctta |
15827413 |
T |
|
| Q |
118 |
taatcagtattctcagcagtaggcactgcttcaacatctctatcatggtactcaacaattttcattagactaagatcagccaccatggtgattccagtaa |
217 |
Q |
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| T |
15827414 |
tattcagtgttctcagccgtaggcacaacttcaacttctctatcatgatattcaacaattttcatgagtccaagatcagcaaccattgttaatccactaa |
15827513 |
T |
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| Q |
218 |
taggcctaacatatatattaacagtactttctttcataaaacagtcaactctcacagtccttctattctctgcttctcca |
297 |
Q |
| |
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||||||| ||| | | ||||||||| |||||||||||||||| |||||||||||||||||| || ||||| |||||||| |
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| T |
15827514 |
taggcctcacaaaaaaattaacagtgttttctttcataaaacaatcaactctcacagtccttttactctcttcttctcca |
15827593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 48833551 - 48833272
Alignment:
| Q |
18 |
aacactgtgaccattgatctgaaagccaggaccttgaggttgatgactagcaagactatgctgttttggtccaaatggtggactttgttttgaaaccctg |
117 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48833551 |
aacactgtggccattgatctggaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtccaaatggtgggttttgttttgaaacctga |
48833452 |
T |
|
| Q |
118 |
taatcagtattctcagcagtaggcactgcttcaacatctctatcatggtactcaacaattttcattagactaagatcagccaccatggtgattccagtaa |
217 |
Q |
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|| ||| | |||||||| |||||||| | ||||| || || ||||| ||||||||||||||||| ||| ||||||| | || || || | |||| ||| |
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| T |
48833451 |
tattcattgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcatacgaccaagatcaacaacaattgttaatccactaa |
48833352 |
T |
|
| Q |
218 |
taggcctaacatatatattaacagtactttctttcataaaacagtcaactctcacagtccttctattctctgcttctcca |
297 |
Q |
| |
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||||||| ||||| ||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||| |
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| T |
48833351 |
taggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagtccttctactctctttttctcca |
48833272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 48791842 - 48792121
Alignment:
| Q |
18 |
aacactgtgaccattgatctgaaagccaggaccttgaggttgatgactagcaagactatgctgttttggtccaaatggtggactttgttttgaaaccctg |
117 |
Q |
| |
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|||||| || || |||||||| |||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
48791842 |
aacactatggcccttgatctggaagccaggaccttgaggttgatgactggtaagactatgctggtttggtccaaatggtgggctttgttttgaaacctga |
48791941 |
T |
|
| Q |
118 |
taatcagtattctcagcagtaggcactgcttcaacatctctatcatggtactcaacaattttcattagactaagatcagccaccatggtgattccagtaa |
217 |
Q |
| |
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|| ||||| || ||||| |||||||| | ||||| ||||| ||||| || |||||||||||| ||| | ||||||| | || ||||| | |||| ||| |
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| T |
48791942 |
tattcagtgttttcagctgtaggcacagtttcaatttctctgtcatgatattcaacaattttctgtagtccaagatcaacaacaatggttaatccactaa |
48792041 |
T |
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| Q |
218 |
taggcctaacatatatattaacagtactttctttcataaaacagtcaactctcacagtccttctattctctgcttctcca |
297 |
Q |
| |
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||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
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| T |
48792042 |
taggcctcacatatatattaacactgttttctttcataaaacagtcaactctcacagtccttttactctcttcttctcca |
48792121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 278
Target Start/End: Complemental strand, 40845791 - 40845640
Alignment:
| Q |
127 |
ttctcagcagtaggcactgcttcaacatctctatcatggtactcaacaattttcattagactaagatcagccaccatggtgattccagtaataggcctaa |
226 |
Q |
| |
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|||||| | |||||||| ||||||| | |||||||||| ||||||||||| ||||| || ||||||| | || || | ||||||||||||||||||| |
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| T |
40845791 |
ttctcatccgtaggcacagcttcaataactctatcatgatactcaacaatcttcataagttcaagatcaacaacaattttaattccagtaataggcctaa |
40845692 |
T |
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| Q |
227 |
catatatattaacagtactttctttcataaaacagtcaactctcacagtcct |
278 |
Q |
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|||||||||| |||| |||||||||| || ||||| | ||||||||||| |
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| T |
40845691 |
catatatattggcagtgttttctttcattaagcagtctaacctcacagtcct |
40845640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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