View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9706_low_36 (Length: 280)
Name: NF9706_low_36
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 20397223 - 20397476
Alignment:
| Q |
14 |
aggtagctttagaaacttgtagaccatatcaaacataaagaaattattgtaattaactactttcacaaattcaatatatcgttctactcaagttcatttt |
113 |
Q |
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| T |
20397223 |
aggtagctttagaagcttgtaagccatatcaaacataaagaaattattgtaattatctactttcacaaattcaatatatcgttctactcaagttcatttt |
20397322 |
T |
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| Q |
114 |
agaagtaattgccatgcaacaattaattatatca--atatcattctacacaaattacaagcattaccaaatgaacccacaaatgggtagctttctttttg |
211 |
Q |
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| T |
20397323 |
agaagtaattgccatgcaccaattaattatatcaatatatcattctacacaaattacaagcattaccaaatgaacccaaaaatgggtagctttctttttg |
20397422 |
T |
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| Q |
212 |
gtcgagcaagaagtgaattgcaattgtaaaaacatgaattaaaatctcaaagat |
265 |
Q |
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| T |
20397423 |
gtcgagcaagaagtgaattgcaattgtaaaaacatgaattaaaatctcaaagat |
20397476 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 52690964 - 52690920
Alignment:
| Q |
212 |
gtcgagcaagaagtgaattgcaattgtaaaaacatgaattaaaat |
256 |
Q |
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| T |
52690964 |
gtcgagcaagacgtgaattgcaattgtaaaatcttgaattaaaat |
52690920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 18108214 - 18108282
Alignment:
| Q |
197 |
gtagctttctttttggtcgagcaagaagtgaattgcaattgtaaaaacatgaattaaaatctcaaagat |
265 |
Q |
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| T |
18108214 |
gtagcttccttcttggtcaagcaatatgtgagttgcaattgtaagaacttgaattaaaattgcaaagat |
18108282 |
T |
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