View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9706_low_37 (Length: 278)
Name: NF9706_low_37
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 52490759 - 52490501
Alignment:
| Q |
1 |
agaagcacaaggtggcaagtgacaaagaggtccagaatcaaaactcatagannnnnnnnnnnnnnnnnnnnnnnngaagtatgatgtgaggtgaagcatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52490759 |
agaagcacaaggtggcaagtgacaaagaggtccagaatcaaaactcatagattttttattttatttttgatttttgaagtatgatgtgaggtgaagcatc |
52490660 |
T |
|
| Q |
101 |
catatccatatatgaatgaaggaaatatatgatacagaacattcatactatcaattttacattatatattgcctttgacaacatggctaatttttgcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52490659 |
catatccatatatgaatgaaggaaatatatgatacagaacattcatactatcaattttacattatatattgcctttgacaacatggctaatttttgcatt |
52490560 |
T |
|
| Q |
201 |
aattttgtcttttgccgacaccctttcttgtctgctacatgtaattgatgattgattga |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52490559 |
aattttgtcttttgccgacaccctttcttgtctgctacatgtaattgatgattgattga |
52490501 |
T |
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