View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9706_low_39 (Length: 250)

Name: NF9706_low_39
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9706_low_39
NF9706_low_39
[»] chr4 (3 HSPs)
chr4 (13-214)||(17225142-17225346)
chr4 (90-214)||(5373863-5373988)
chr4 (136-192)||(40225497-40225554)
[»] chr5 (2 HSPs)
chr5 (90-214)||(20319509-20319634)
chr5 (216-249)||(22847826-22847859)
[»] chr7 (2 HSPs)
chr7 (20-192)||(47762075-47762259)
chr7 (13-64)||(20290560-20290610)
[»] chr3 (4 HSPs)
chr3 (19-192)||(7051112-7051296)
chr3 (215-250)||(8737472-8737507)
chr3 (215-250)||(9089710-9089745)
chr3 (214-249)||(48895840-48895875)
[»] chr2 (2 HSPs)
chr2 (13-192)||(42735282-42735475)
chr2 (214-249)||(24543678-24543713)
[»] chr1 (6 HSPs)
chr1 (13-189)||(11398162-11398349)
chr1 (144-214)||(41956049-41956119)
chr1 (136-192)||(52935172-52935229)
chr1 (136-192)||(52942807-52942864)
chr1 (136-192)||(52946215-52946272)
chr1 (145-192)||(18136436-18136484)
[»] chr6 (1 HSPs)
chr6 (216-244)||(1469523-1469551)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 17225142 - 17225346
Alignment:
Q  13 aaggtggaataacaaccaatttgcaagtaaaataacaatacaaagaagaactcgaagaaagataagagcgaactaggga--atcatagagagaagaagag 110  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||  | |  |||  || ||  |||| ||||||||||||||    
T  17225142 aaggaggaataacaaccaatttgcaagtaaaataacaatagaaagaagaacttgaagaaagagtacaaggaataagagagaatcagagagagaagaagag 17225241  T
Q  111 tttcatcacatattttccatgct-acttccttcgcttttctcttatttataagggtcctatttctatttcccatattgcccctggttgctctttgactca 209  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17225242 tttcatcacatatcttccatgcttacttccttggcttttctcttatttataagggtcctatttctatttcccatattgcccctgattgctctttgactca 17225341  T
Q  210 ttaca 214  Q
    |||||    
T  17225342 ttaca 17225346  T

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Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 90 - 214
Target Start/End: Original strand, 5373863 - 5373988
Alignment:
Q  90 gaatcatagagagaagaagagtttcatcacatattttccatgct-acttccttcgcttttctcttatttataagggtcctatttctatttcccatattgc 188  Q
    |||||| |||||||||||||||||||||||| ||||| |||||| | ||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  5373863 gaatcagagagagaagaagagtttcatcacacatttttcatgcttatttccttgacttttctcttatttataagggtcctatttctatttcccatattgc 5373962  T
Q  189 ccctggttgctctttgactcattaca 214  Q
    ||||| ||||||||||||| ||||||    
T  5373963 ccctgattgctctttgacttattaca 5373988  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 40225497 - 40225554
Alignment:
Q  136 ttccttcgcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 192  Q
    |||||| ||||||||| ||||||| ||||||| |||| |||||||||||| |||||||    
T  40225497 ttccttggcttttctcatatttattagggtccatattcctatttcccataatgcccct 40225554  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 90 - 214
Target Start/End: Original strand, 20319509 - 20319634
Alignment:
Q  90 gaatcatagagagaagaagagtttcatcacatattttccatgct-acttccttcgcttttctcttatttataagggtcctatttctatttcccatattgc 188  Q
    |||||| |||||||||||||||||||||||| || || |||||| | |||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  20319509 gaatcagagagagaagaagagtttcatcacacatatttcatgcttatttcctggacttttctcttatttataagggtcctatttctatttcccatattgc 20319608  T
Q  189 ccctggttgctctttgactcattaca 214  Q
    ||||| ||||||||||||| ||||||    
T  20319609 ccctgattgctctttgacttattaca 20319634  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 22847859 - 22847826
Alignment:
Q  216 atttctagtttgatcatgcttgtaataataaaaa 249  Q
    |||||||||||||||||||||||||||| |||||    
T  22847859 atttctagtttgatcatgcttgtaataacaaaaa 22847826  T

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Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 47762259 - 47762075
Alignment:
Q  20 aataacaaccaatttgcaagtaaaataacaatacaaagaagaactcgaagaaaga----------taagagcgaactagggaatcatagagagaagaaga 109  Q
    ||||||||||| ||||||||||||||||||||| |||||| |||| |||||||||          |||||| ||||||| |||||| |||||||||||||    
T  47762259 aataacaaccattttgcaagtaaaataacaatagaaagaaaaacttgaagaaagagtacaaggaataagagagaactagagaatcagagagagaagaaga 47762160  T
Q  110 gtttcatcacatattttccatgc-tacttccttcgcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 192  Q
    |||||||||||||||||| || | || |||||| ||||||||| ||||||||||||||| |||| |||||| ||||| |||||||    
T  47762159 gtttcatcacatattttcaatccttatttccttggcttttctcatatttataagggtccatattcctattttccataatgcccct 47762075  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 20290560 - 20290610
Alignment:
Q  13 aaggtggaataacaaccaatttgcaagtaaaataacaatacaaagaagaact 64  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  20290560 aaggaggaataacaaccaatttgcaagt-aaataacaatagaaagaagaact 20290610  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 7051296 - 7051112
Alignment:
Q  19 gaataacaaccaatttgcaagtaaaataacaatacaaagaagaactcgaagaaaga----------taagagcgaactagggaatcatagagagaagaag 108  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||          |||||| ||| ||| |||||  ||||||||||||    
T  7051296 gaataacaaccaatttgcaagtaaaataacaatagaaagaagaacttgaagaaagagtacaaggaataagagagaattagagaatccgagagagaagaag 7051197  T
Q  109 agtttcatcacatattttccatgc-tacttccttcgcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 192  Q
    |||||||||||||||||||||| | || |||||| |  |||||||||||||||||||||| |||| || ||||||||||| |||||    
T  7051196 agtttcatcacatattttccatccttatttcctt-ggatttctcttatttataagggtccatattcctttttcccatattacccct 7051112  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 250
Target Start/End: Original strand, 8737472 - 8737507
Alignment:
Q  215 aatttctagtttgatcatgcttgtaataataaaaac 250  Q
    ||||||||||||||||||||||||||||||||||||    
T  8737472 aatttctagtttgatcatgcttgtaataataaaaac 8737507  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 250
Target Start/End: Original strand, 9089710 - 9089745
Alignment:
Q  215 aatttctagtttgatcatgcttgtaataataaaaac 250  Q
    ||||||||||||||||||||||||||||||||||||    
T  9089710 aatttctagtttgatcatgcttgtaataataaaaac 9089745  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 48895875 - 48895840
Alignment:
Q  214 aaatttctagtttgatcatgcttgtaataataaaaa 249  Q
    ||||||||||||||||| ||||||||||||||||||    
T  48895875 aaatttctagtttgatcctgcttgtaataataaaaa 48895840  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 42735475 - 42735282
Alignment:
Q  13 aaggtggaataacaaccaatttgcaagtaaaataacaatacaaagaagaactcgaagaaagat----------aagagcgaactagggaatcatagagag 102  Q
    |||| ||||||||| |||||||||||||||| |||||||| ||||||||||| |||||||||           ||||| ||||||| |||||| ||||||    
T  42735475 aaggaggaataacagccaatttgcaagtaaactaacaatagaaagaagaacttgaagaaagagtacaaggaacaagagagaactagagaatcagagagag 42735376  T
Q  103 aagaagagtttcatcacatattttccatgc-tacttccttcgcttttctcttatttata--agggtcc-tatttctatttcccatattgcccct 192  Q
    || ||||||||||||||||||||| ||||| || ||||||  |||||||| ||||||||  ||||||| |||| |||||||||||| |||||||    
T  42735375 aataagagtttcatcacatatttttcatgcttatttccttgccttttctcatatttataagagggtccatattcctatttcccataatgcccct 42735282  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 24543713 - 24543678
Alignment:
Q  214 aaatttctagtttgatcatgcttgtaataataaaaa 249  Q
    ||||||||||||||||||||||||||||||| ||||    
T  24543713 aaatttctagtttgatcatgcttgtaataatcaaaa 24543678  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 11398162 - 11398349
Alignment:
Q  13 aaggtggaataacaaccaatttgcaagtaaaataacaatacaaagaagaactcgaagaaag----------ataagagcgaactagggaatcatagagag 102  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||          ||| ||| ||||| | |||||  ||||||    
T  11398162 aaggaggaataacaaccaatttgcaagtaaaataacaatagaaagaaaaacttgaagaaagagtacaaggaataggagagaactggagaatc--agagag 11398259  T
Q  103 aagaagagtttcatcacata-ttttccatgc-tacttccttcgcttttctcttatttataagggtcc-tatttctatttcccatattgcc 189  Q
    |||||||||||||||||||| |||||||| | || |||||| ||||||||| ||||||||||||||| |||| |||||| ||||| ||||    
T  11398260 aagaagagtttcatcacatatttttccatccttatttccttggcttttctcatatttataagggtccatattcctattttccataatgcc 11398349  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 41956119 - 41956049
Alignment:
Q  144 cttttctcttatttataagggtcctatttctatttcccatattgcccctggttgctctttgactcattaca 214  Q
    |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||    
T  41956119 cttttctcttatttataagggtcctatttctatttcccatattgtccttgattgctctttgactcattaca 41956049  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 52935229 - 52935172
Alignment:
Q  136 ttccttcgcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 192  Q
    |||||| ||||||||| ||||||||||||||| |||| |||||||||||| |||||||    
T  52935229 ttccttggcttttctcatatttataagggtccatattcctatttcccataatgcccct 52935172  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 52942864 - 52942807
Alignment:
Q  136 ttccttcgcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 192  Q
    |||||| ||||||||| ||||||||||||||| |||| |||||||||||| |||||||    
T  52942864 ttccttggcttttctcatatttataagggtccatattcctatttcccataatgcccct 52942807  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 52946272 - 52946215
Alignment:
Q  136 ttccttcgcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 192  Q
    |||||| ||||||||| ||||||||||||||| |||| |||||||||||| |||||||    
T  52946272 ttccttggcttttctcatatttataagggtccatattcctatttcccataatgcccct 52946215  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 18136484 - 18136436
Alignment:
Q  145 ttttctcttatttataagggtcc-tatttctatttcccatattgcccct 192  Q
    ||||||| ||||||||||||||| |||| |||||||||||| |||||||    
T  18136484 ttttctcatatttataagggtccatattcctatttcccataatgcccct 18136436  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 1469523 - 1469551
Alignment:
Q  216 atttctagtttgatcatgcttgtaataat 244  Q
    |||||||||||||||||||||||||||||    
T  1469523 atttctagtttgatcatgcttgtaataat 1469551  T

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