View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9706_low_4 (Length: 586)
Name: NF9706_low_4
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 54819043 - 54818728
Alignment:
| Q |
16 |
atcaaatcaaatgtggggaatcacatatttccaacaaagtgaggattcacccactatccgtgtaattagccgaacaaggttaaattttacaggccacatt |
115 |
Q |
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| T |
54819043 |
atcaaatcaaatgtggggaatcacatatttccaacaaagtgaggattcacccactatccgtgtaatt------------------tttacaggccacatt |
54818962 |
T |
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| Q |
116 |
gttttggttagtaggattagtgtttgtctataaataccgaacgtctaagttttttcaacataggcaaccaatcaaataagnnnnnnnnatcaagtaatct |
215 |
Q |
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| T |
54818961 |
gttttggttagtaggattagtgtttgtctataaataccggacttgtaaatttttttaacataggcaaccaatcaaacaagtttttttg-tcaagtaatct |
54818863 |
T |
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| Q |
216 |
tgcagctataattcatcttttaagatagataaataattttgcggctcaacaacttctataatttattctaaatcatattcattttcattttccttaactt |
315 |
Q |
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| T |
54818862 |
tgcatctaaaattcatcttttaagatagataaataattttgcggctcaacaacttctataatttattctaaatcttattcattctcattttccttaactt |
54818763 |
T |
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| Q |
316 |
ttaaatttattggacggcaaactagtaatataaga |
350 |
Q |
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| T |
54818762 |
ttaaatttattggacggcaaactagtaatataaga |
54818728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 363 - 565
Target Start/End: Complemental strand, 54818652 - 54818450
Alignment:
| Q |
363 |
tcataaatgtctttttcaccatacttgggtcactgccacatatatagcgtggtgaatcactgtcaattcaaccgctataaagtgtcatgcgttggtgaga |
462 |
Q |
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| T |
54818652 |
tcataaatgtctttttcaccatacttgggtcactgccacatatatagcgtgctgaatcactgtcaattcaaccgctataaagtgtcatgcgttggtgaga |
54818553 |
T |
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| Q |
463 |
gatgccatgtactaatccatcttttaattatggaataaggtaaaaatcaattttatacctaagaattttatcattatttaatattaagacttaagagcta |
562 |
Q |
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| T |
54818552 |
gatgccatgtactaatccatcttttaattctggaattaggtaaaaatcaattttatacctaagaattttatcattatttaatattaagacttaagagcta |
54818453 |
T |
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| Q |
563 |
caa |
565 |
Q |
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| T |
54818452 |
caa |
54818450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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