View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9706_low_44 (Length: 244)
Name: NF9706_low_44
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_low_44 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 9884100 - 9883857
Alignment:
| Q |
1 |
tcaacagctcttttttcgtctgcttttgcttcttcagcttgtttaaataaaacctctagtttaccttctatttcttcagacaaagctttggagttatcag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9884100 |
tcaacagctcttttttcgtctgcttttgcttcttcagcttgtttaaataaaacctctagtttaacttctatttcttcagacaaagctttggagttatcag |
9884001 |
T |
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| Q |
101 |
cttcttgtttcagttcctgagctttcattctcatctcttcttcnnnnnnncttgcattttctgtctcgaatgataactgcttgattttcaattctatttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9884000 |
cttcttgtttcagttcctgagctttcattctcatctcttcttcttcttttcttgcattttctgtctcgaatgataactgcttgattttcaattctatttc |
9883901 |
T |
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| Q |
201 |
ttgacaatgactctcattagattctttgttttccatagaatttt |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9883900 |
ttgacaatgactctcattagattctttgttttccatagaatttt |
9883857 |
T |
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