View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9706_low_5 (Length: 546)
Name: NF9706_low_5
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9706_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 8e-87; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 366 - 536
Target Start/End: Original strand, 46036092 - 46036262
Alignment:
| Q |
366 |
aatacataatacaattgagacaacaattttatgctggaattctggaagaaaagaaaaatccctatcataaattaaaccaaataggctcttatcagtgagt |
465 |
Q |
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| T |
46036092 |
aatacataatacaattgagacaacaattttatgctggaattctgaaagaaaagaaaaatccctatcataaattaaaccaaataggctcttatcaatgagt |
46036191 |
T |
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| Q |
466 |
atttttaggcataaatgaaaattcaaatattcatccatccaatgttcttgttgcgactgctttgtcctatg |
536 |
Q |
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| T |
46036192 |
atttttaggcataaatgaaaattcaaatattcatccatccaatgttcttgttgcgactgctttgtcctatg |
46036262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 224 - 374
Target Start/End: Original strand, 46034968 - 46035118
Alignment:
| Q |
224 |
tactacacaaagtgggttgattattatgagaaaaatagacccatcaaatttaattttatttcttatgattatcatcattttgcaaatagaaacagaggtt |
323 |
Q |
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| T |
46034968 |
tactacacaaagtggattgattaatatgagaaaaatagacccatcaaattttattttatttcttatgattatcatcattttgcaaatagaaacagaggtt |
46035067 |
T |
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| Q |
324 |
aatatgtacaccaccaattctggcattggctagctagctacaaatacataa |
374 |
Q |
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| T |
46035068 |
aatatgtacaacaccaattctggcattggctagctagctacaaatacataa |
46035118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 62 - 194
Target Start/End: Original strand, 46034839 - 46034971
Alignment:
| Q |
62 |
ttgtataaccataaacttcttatcaatctactcctccatcaaaccacacttgtttagtttttcatgtcttcaaactctatatctttgttataatgtgatg |
161 |
Q |
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| T |
46034839 |
ttgtataaccataaacttcttatcaatctactcctccatcaaaccacacttgtttagtttttcatgtcttcaaactctatatctttgttataatgtgatg |
46034938 |
T |
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| Q |
162 |
ttcctttggctttcccaactatagttgtatact |
194 |
Q |
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| T |
46034939 |
ttcctttggctttcccagctatagttgtatact |
46034971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 46034758 - 46034819
Alignment:
| Q |
18 |
aaacactactttaggacatgatgtatcaaatacgccctagttgtttgtataaccataaactt |
79 |
Q |
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| T |
46034758 |
aaacactactttaggacataatgtatcaaatacgccctagttgtttgtataaccataaactt |
46034819 |
T |
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