View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9706_low_9 (Length: 469)

Name: NF9706_low_9
Description: NF9706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9706_low_9
NF9706_low_9
[»] chr5 (3 HSPs)
chr5 (1-261)||(21006134-21006392)
chr5 (129-260)||(21011799-21011929)
chr5 (177-221)||(8284283-8284327)
[»] chr6 (2 HSPs)
chr6 (1-260)||(26452097-26452354)
chr6 (129-260)||(26446500-26446630)
[»] chr8 (6 HSPs)
chr8 (1-261)||(43583378-43583636)
chr8 (15-260)||(24744389-24744632)
chr8 (129-260)||(43579675-43579805)
chr8 (129-260)||(24750022-24750152)
chr8 (177-221)||(9190481-9190525)
chr8 (177-221)||(12820137-12820181)
[»] chr1 (5 HSPs)
chr1 (133-222)||(48332747-48332836)
chr1 (129-222)||(24501976-24502069)
chr1 (49-117)||(32960126-32960194)
chr1 (157-222)||(32960236-32960299)
chr1 (164-213)||(32959886-32959935)
[»] chr7 (1 HSPs)
chr7 (159-222)||(7338174-7338237)
[»] chr3 (2 HSPs)
chr3 (179-221)||(53901602-53901644)
chr3 (177-209)||(4067971-4068003)
[»] chr4 (1 HSPs)
chr4 (177-221)||(50497028-50497072)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 8e-56; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 21006392 - 21006134
Alignment:
Q  1 gaatgagacaaataaaaccctaatttttgacatttcatgcccttttatattgatgacagtgatttgccatgtcctcaagtgattggccaacctggagtac 100  Q
    ||||||||  |||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||   |    
T  21006392 gaatgagatcaataaaaccctaatttttgacatttcatccccttttatattgctgatagtgatttgccatgtcctcaagtgattggccaacgtggacagc 21006293  T
Q  101 cacatgttcagagttaacgnnnnnnnnccaaaaagttaacagaaatgaccaattaagtaaacggaagagtacttacaggaccatattaaaacatttaata 200  Q
    ||| ||| |||||||||||         |||||||||||| |||| || ||| |  ||||||||||||| ||||||||||||| ||| | |||||||| |    
T  21006292 cacttgtgcagagttaacgtttttttt-caaaaagttaactgaaaggatcaactgggtaaacggaagagaacttacaggaccaaattgacacatttaaaa 21006194  T
Q  201 gttaagggactgaagtgagaagnnnnnnntaagttaagggacctgcgtatgtattaagccc 261  Q
    ||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||    
T  21006193 gttaagggactaaagtgagaag-aaaaaataagttaagggacctgcgtatgtattaagccc 21006134  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 129 - 260
Target Start/End: Original strand, 21011799 - 21011929
Alignment:
Q  129 caaaaagttaacagaaatgaccaattaagtaaacggaagagtacttacaggaccatattaaaacatttaatagttaagggactgaagtgagaagnnnnnn 228  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||          
T  21011799 caaaaagttaacagaaaggaccaactaagtaaacagaagagtactgacaggaccaaattgaaacatttaatagttaagggactgaagtgagaag-aaaaa 21011897  T
Q  229 ntaagttaagggacctgcgtatgtattaagcc 260  Q
     |||||||||||||||||||||||||||||||    
T  21011898 ataagttaagggacctgcgtatgtattaagcc 21011929  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 8284283 - 8284327
Alignment:
Q  177 aggaccatattaaaacatttaatagttaagggactgaagtgagaa 221  Q
    ||||||| |||||||||||||||||||||| |||| || ||||||    
T  8284283 aggaccaaattaaaacatttaatagttaagagactaaactgagaa 8284327  T

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Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 26452097 - 26452354
Alignment:
Q  1 gaatgagacaaataaaaccctaatttttgacatttcatgcccttttatattgatgacagtgatttgccatgtcctcaagtgattggccaacctggagtac 100  Q
    ||||||||  |||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||   |    
T  26452097 gaatgagatcaataaaaccctaatttttgacatttcatccccttttatattgctgatagtgatttgccatgtcctcaagtgattggccaacgtggacagc 26452196  T
Q  101 cacatgttcagagttaacgnnnnnnnnccaaaaagttaacagaaatgaccaattaagtaaacggaagagtacttacaggaccatattaaaacatttaata 200  Q
    ||| ||  || ||||||||          || || |||||||||| |||||| |||||||||||||||||||||||||||||| ||| | |||||||| |    
T  26452197 cacctgaacatagttaacgtttttttt-taacaaattaacagaaaggaccaactaagtaaacggaagagtacttacaggaccaaattgacacatttaaaa 26452295  T
Q  201 gttaagggactgaagtgagaagnnnnnnntaagttaagggacctgcgtatgtattaagcc 260  Q
    ||||||||||||||||||||||       |||||||||||||||||||||| ||||||||    
T  26452296 gttaagggactgaagtgagaag-aaaaaataagttaagggacctgcgtatgcattaagcc 26452354  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 129 - 260
Target Start/End: Complemental strand, 26446630 - 26446500
Alignment:
Q  129 caaaaagttaacagaaatgaccaattaagtaaacggaagagtacttacaggaccatattaaaacatttaatagttaagggactgaagtgagaagnnnnnn 228  Q
    ||||||||||| ||||| |||||| ||||||||| |||||||||||||||||||| ||| | |||||||| ||||||| |||||||||||||||          
T  26446630 caaaaagttaatagaaaggaccaactaagtaaacagaagagtacttacaggaccaaattgacacatttaaaagttaagagactgaagtgagaag-aaaaa 26446532  T
Q  229 ntaagttaagggacctgcgtatgtattaagcc 260  Q
     ||||||||||||| |||||||| ||||||||    
T  26446531 ataagttaagggacatgcgtatgcattaagcc 26446500  T

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Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 43583378 - 43583636
Alignment:
Q  1 gaatgagacaaataaaaccctaatttttgacatttcatgcccttttatattgatgacagtgatttgccatgtcctcaagtgattggccaacctggagtac 100  Q
    ||||||||  |||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||   |    
T  43583378 gaatgagatcaataaaaccctaatttttgacatttcatccccttttatattgctgatagtgatttgccatgtcctcaagtgattggccaacgtggacagc 43583477  T
Q  101 cacatgttcagagttaacgnnnnnnnnccaaaaagttaacagaaatgaccaattaagtaaacggaagagtacttacaggaccatattaaaacatttaata 200  Q
    ||| | | |||||||||||         ||||||||||||||||| || ||| |  ||||||||||||| ||||||||||||| ||| | |||||||| |    
T  43583478 cacttatgcagagttaacgtttttttt-caaaaagttaacagaaaggatcaactgggtaaacggaagagaacttacaggaccaaattgacacatttaaaa 43583576  T
Q  201 gttaagggactgaagtgagaagnnnnnnntaagttaagggacctgcgtatgtattaagccc 261  Q
    ||||||||||||||||||||||       ||| ||||||||| ||||||||||||||||||    
T  43583577 gttaagggactgaagtgagaag-aaaaaataaattaagggacatgcgtatgtattaagccc 43583636  T

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Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 15 - 260
Target Start/End: Complemental strand, 24744632 - 24744389
Alignment:
Q  15 aaaccctaatttttgacatttcatgcccttttatattgatgacagtgatttgccatgtcctcaagtgattggccaacctggagtaccacatgttcagagt 114  Q
    |||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||   |||| ||| || |||    
T  24744632 aaaccctaatttttgacatttcatccccttttatattgctgatagtgatttgccatgtcctcaagtgattggccaacgtggacagccacctgtacatagt 24744533  T
Q  115 taacgnnnnnnnnccaaaaagttaacagaaatgaccaattaagtaaacggaagagtacttacaggaccatattaaaacatttaatagttaagggactgaa 214  Q
    |||||         ||||||||||||||||| |||||| |||||||||||| ||||||||||||||||| ||| | ||| |||| |||||||| ||||||    
T  24744532 taacgtttttttt-caaaaagttaacagaaaggaccaactaagtaaacggaggagtacttacaggaccaaattgacacaattaaaagttaaggaactgaa 24744434  T
Q  215 gtgagaagnnnnnnntaagttaagggacctgcgtatgtattaagcc 260  Q
    ||||||||       ||||||||||||||| |||||| ||||||||    
T  24744433 gtgagaag-aaaaaataagttaagggacctccgtatgcattaagcc 24744389  T

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Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 129 - 260
Target Start/End: Complemental strand, 43579805 - 43579675
Alignment:
Q  129 caaaaagttaacagaaatgaccaattaagtaaacggaagagtacttacaggaccatattaaaacatttaatagttaagggactgaagtgagaagnnnnnn 228  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||          
T  43579805 caaaaagttaacagaaaggaccaactaagtaaacggaagagtacttacaggaccaaattgaaacatttaatagttaagggactgaagtgagaag-aaaaa 43579707  T
Q  229 ntaagttaagggacctgcgtatgtattaagcc 260  Q
     ||||||||| ||| |||||||||||||||||    
T  43579706 ataagttaagagacttgcgtatgtattaagcc 43579675  T

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Target: chr8; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 129 - 260
Target Start/End: Original strand, 24750022 - 24750152
Alignment:
Q  129 caaaaagttaacagaaatgaccaattaagtaaacggaagagtacttacaggaccatattaaaacatttaatagttaagggactgaagtgagaagnnnnnn 228  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||| | |||||||| |||||||||||||||||||||||          
T  24750022 caaaaagttaacagaaaggaccaactaagtaaacggaagagtacttacaggaccaaattgacacatttaaaagttaagggactgaagtgagaag-aaaaa 24750120  T
Q  229 ntaagttaagggacctgcgtatgtattaagcc 260  Q
     ||||||||||||| |||||||| ||||||||    
T  24750121 ataagttaagggacttgcgtatgcattaagcc 24750152  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 9190481 - 9190525
Alignment:
Q  177 aggaccatattaaaacatttaatagttaagggactgaagtgagaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| || ||||||    
T  9190481 aggaccaaattgaaacatttaatagttaagggactaaactgagaa 9190525  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 12820137 - 12820181
Alignment:
Q  177 aggaccatattaaaacatttaatagttaagggactgaagtgagaa 221  Q
    ||||||| |||||||| ||||||||||||||||| ||| ||||||    
T  12820137 aggaccaaattaaaacgtttaatagttaagggaccgaactgagaa 12820181  T

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Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 48332836 - 48332747
Alignment:
Q  133 aagttaacagaaatgaccaattaagtaaacggaagagtacttacaggaccatattaaaacatttaatagttaagggactgaagtgagaag 222  Q
    ||||||||||||| |||||| |||||||||||||||||| ||| ||||||| ||| ||||||||||||||||||||||||||||||||||    
T  48332836 aagttaacagaaaggaccaactaagtaaacggaagagtatttataggaccaaattgaaacatttaatagttaagggactgaagtgagaag 48332747  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 24501976 - 24502069
Alignment:
Q  129 caaaaagttaacagaaatgaccaattaagtaaacggaagagtacttacaggaccatattaaaacatttaatagttaagggactgaagtgagaag 222  Q
    ||||||||||||||||| || ||| |  ||||||||||||| ||||||||||||| ||| | |||||||| |||||||||| ||||||||||||    
T  24501976 caaaaagttaacagaaaggatcaactgggtaaacggaagagaacttacaggaccaaattgacacatttaaaagttaagggaatgaagtgagaag 24502069  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 32960126 - 32960194
Alignment:
Q  49 attgatgacagtgatttgccatgtcctcaagtgattggccaacctggagtaccacatgttcagagttaa 117  Q
    |||| ||| |||||||| ||||||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  32960126 attgctgagagtgattttccatgtcctcaagtgattggccaacatggagaaccacatgtgcagagttaa 32960194  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 32960236 - 32960299
Alignment:
Q  157 gtaaacggaagagtacttacaggaccatattaaaacatttaatagttaagggactgaagtgagaag 222  Q
    ||||||| |||||||  || ||||||| ||| | ||||||||||||||||| ||||||||||||||    
T  32960236 gtaaacgaaagagta--tagaggaccaaattgacacatttaatagttaaggaactgaagtgagaag 32960299  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 32959935 - 32959886
Alignment:
Q  164 gaagagtacttacaggaccatattaaaacatttaatagttaagggactga 213  Q
    |||||||| ||||| ||||| ||||| |||||||||||||||| ||||||    
T  32959935 gaagagtatttacatgaccagattaatacatttaatagttaagagactga 32959886  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 7338237 - 7338174
Alignment:
Q  159 aaacggaagagtacttacaggaccatattaaaacatttaatagttaagggactgaagtgagaag 222  Q
    ||||||||||| ||||||||||| | ||| | ||||||||| ||||||||| ||||||||||||    
T  7338237 aaacggaagagaacttacaggactaaattgacacatttaattgttaagggattgaagtgagaag 7338174  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 53901644 - 53901602
Alignment:
Q  179 gaccatattaaaacatttaatagttaagggactgaagtgagaa 221  Q
    ||||| ||||||||||||||||||||||||||| || ||||||    
T  53901644 gaccaaattaaaacatttaatagttaagggactaaactgagaa 53901602  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 4068003 - 4067971
Alignment:
Q  177 aggaccatattaaaacatttaatagttaaggga 209  Q
    ||||||| |||||||||||||||||||||||||    
T  4068003 aggaccaaattaaaacatttaatagttaaggga 4067971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 50497072 - 50497028
Alignment:
Q  177 aggaccatattaaaacatttaatagttaagggactgaagtgagaa 221  Q
    ||||||| ||||||||||||||||||||||| ||| || ||||||    
T  50497072 aggaccaaattaaaacatttaatagttaaggaactaaactgagaa 50497028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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