View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9707_high_1 (Length: 637)
Name: NF9707_high_1
Description: NF9707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9707_high_1 |
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| [»] scaffold0899 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 297 - 622
Target Start/End: Original strand, 40031804 - 40032130
Alignment:
| Q |
297 |
tagatgaagtgtaacacattcatataatgaggtattcatcctacactactttctctcactcaagtatggttaattttggaatttacgatgaaattcgatg |
396 |
Q |
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| T |
40031804 |
tagatgaagtgtaacacagacatataatgaggtattcatcctacactactttctctcactcaagtatggttaatttcggaatttacgatgaaattcgatg |
40031903 |
T |
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| Q |
397 |
tattaatgttgatatgattgtacttaattaac-nnnnnnnnattgaaatatgcgaatattagttgttacaatattgttaaagattgctc----nnnnnnn |
491 |
Q |
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| T |
40031904 |
tattaatgttgatatgattgtacttaattaactttttttttattgaaatatgcaaatattagttgttacaatattattaaagattgctcaaaaaaaaaaa |
40032003 |
T |
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| Q |
492 |
nnntttgtt-aaagaggaaagaaaaaatattaagagagattgacctcctttcttaaactctttcaccatccaaattaaactctttaaccacatatattta |
590 |
Q |
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| T |
40032004 |
aaaattgttaaaagaggaaagaaaaaatattaagagagattgaactcctttcttaaactctttcgccatcc-----aaactctttaaccacatatattta |
40032098 |
T |
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| Q |
591 |
aactttataatgtcatatcaaatgaggggtat |
622 |
Q |
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| T |
40032099 |
aactttataatgtcatatcaaatgaggggtat |
40032130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 40031709 - 40031755
Alignment:
| Q |
8 |
acgtaggatgtgaccccatagtatataggaccattttatcatggtaa |
54 |
Q |
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| T |
40031709 |
acgtaggatgtgaccccatagtatataggaccattttatcatggtaa |
40031755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 8e-69; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 100 - 276
Target Start/End: Original strand, 39977330 - 39977504
Alignment:
| Q |
100 |
tatataccacgaaataaaaggccgcgaaatccacgaactcacacagcatgcggcattttttcctttgattaaataatggaataaatattaaattggtttt |
199 |
Q |
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| T |
39977330 |
tatataccacgaaacaaaaggccacgaagtccacgaactcacacagcatgcggcattttttc-tttgattaaataatagaataaatattaaattgatttt |
39977428 |
T |
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| Q |
200 |
tggtggaaaacatgggtggtgataagtgaaattcttggtttccgtggatatatggttcgtaggaaaaagtatttccc |
276 |
Q |
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| T |
39977429 |
tggtggaaaatatgg-tggtgataagtgaaattcttggttttcgtggatatatggttcgtaggaaaaagtatttccc |
39977504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 26381629 - 26381578
Alignment:
| Q |
226 |
tgaaattcttggtttccgtggatatatggttcgtaggaaaaagtatttccct |
277 |
Q |
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| T |
26381629 |
tgaaattcttggttttcgtggatatatggttcgtaggaaaaagcatttccct |
26381578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 28868131 - 28868183
Alignment:
| Q |
188 |
taaattggtttttggtggaaaacatgggtggtgataagtgaaattcttggttt |
240 |
Q |
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| T |
28868131 |
taaattggtctttggtgggaaacatgagtggtggtaagtgaaatttttggttt |
28868183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0899 (Bit Score: 112; Significance: 3e-56; HSPs: 1)
Name: scaffold0899
Description:
Target: scaffold0899; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 130 - 277
Target Start/End: Complemental strand, 2314 - 2168
Alignment:
| Q |
130 |
ccacgaactcacacagcatgcggcattttttcctttgattaaataatggaataaatattaaattggtttttggtggaaaacatgggtggtgataagtgaa |
229 |
Q |
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| T |
2314 |
ccacgaattcacacagcatgcggcattttttc-tttgattaaataatggaataaatattaaattggtttctggtggaaaatatgggtggtgataatcgaa |
2216 |
T |
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| Q |
230 |
attcttggtttccgtggatatatggttcgtaggaaaaagtatttccct |
277 |
Q |
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| T |
2215 |
attcttggttttcgtggatatatggtttgtaggaaaaagtatttccct |
2168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 11070177 - 11070269
Alignment:
| Q |
181 |
taaatattaaattggtttttggtggaaaacatgggtggtgataagtgaaattcttggtttccgtggatatatggttcgtaggaaaaagtattt |
273 |
Q |
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| T |
11070177 |
taaatattaatttggtttttggtggaaaacatgggtggtggtaagtgtaattcttggttttcgtggttttgtggttcgtgggaaaaagcattt |
11070269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 46258885 - 46258826
Alignment:
| Q |
181 |
taaatattaaattggtttttggtggaaaacatgggtggtgataagtgaaattcttggttt |
240 |
Q |
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| T |
46258885 |
taaatattaatttggtttttggtggaaaacatgggtggtggtaagtgtaattcttggttt |
46258826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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