View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9707_high_7 (Length: 355)

Name: NF9707_high_7
Description: NF9707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9707_high_7
NF9707_high_7
[»] chr8 (5 HSPs)
chr8 (1-82)||(1427568-1427649)
chr8 (186-337)||(1427394-1427542)
chr8 (215-286)||(3490210-3490282)
chr8 (186-285)||(39312031-39312131)
chr8 (163-227)||(26040083-26040147)
[»] chr5 (4 HSPs)
chr5 (189-265)||(24514412-24514488)
chr5 (163-265)||(12089180-12089282)
chr5 (159-265)||(40555615-40555719)
chr5 (161-289)||(5156737-5156864)
[»] chr3 (4 HSPs)
chr3 (159-289)||(2910685-2910816)
chr3 (161-286)||(20521585-20521711)
chr3 (180-286)||(18196708-18196815)
chr3 (224-289)||(22270992-22271058)
[»] chr4 (4 HSPs)
chr4 (186-286)||(26784745-26784846)
chr4 (158-265)||(50623816-50623922)
chr4 (210-265)||(34388670-34388725)
chr4 (215-289)||(25490560-25490635)
[»] chr2 (4 HSPs)
chr2 (156-286)||(38778783-38778914)
chr2 (156-222)||(8257313-8257379)
chr2 (184-277)||(31776004-31776097)
chr2 (14-73)||(2815719-2815778)
[»] scaffold0009 (1 HSPs)
scaffold0009 (191-265)||(193558-193632)
[»] chr6 (3 HSPs)
chr6 (215-289)||(14158331-14158406)
chr6 (163-265)||(31238293-31238395)
chr6 (163-265)||(31247663-31247765)
[»] chr1 (1 HSPs)
chr1 (163-222)||(22315026-22315085)


Alignment Details
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 1427649 - 1427568
Alignment:
Q  1 aaagttaaacaaaatttcatatgtcaaaaacattccaaaactcaattgttggtgtatggtttactgtgattaacaaactagg 82  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  1427649 aaagttaaacaaaatttcatatatcaaaaacatttcaaaactcaattgttggtgtatggtttactgtgattaacaaattagg 1427568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 337
Target Start/End: Complemental strand, 1427542 - 1427394
Alignment:
Q  186 cactagttaaggagactaacatagaaatcttgcattgaaaattgtaaaaaagtgatatgtctaactttttaaaagtcaaacttcgttgtttttaagt--- 282  Q
    ||||| ||||||||| ||||||  |||||||||||||||||||||| |||||||  |||| |||||||||||||        | |||||||| ||||       
T  1427542 cactaattaaggagattaacatgaaaatcttgcattgaaaattgta-aaaagtg--atgtttaactttttaaaa--------ttgttgttttcaagtaaa 1427454  T
Q  283 -----aaaagttgatgtatttagttattctcattcgataaattgttgcttatctaaaaaa 337  Q
         |||||||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  1427453 gtttaaaaagttgatgtatttggttattctcattcaataaattgttgcttatttaaaaaa 1427394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 3490282 - 3490210
Alignment:
Q  215 ttgcattgaaaattgtaaaaaagtgatatgtctaactttttaaaagtc-aaacttcgttgtttttaagtaaaa 286  Q
    |||||||||||||||| |||||||| ||||| |||||||||||||||| ||| || |||||||| ||||||||    
T  3490282 ttgcattgaaaattgttaaaaagtggtatgtttaactttttaaaagtcaaaagtttgttgttttcaagtaaaa 3490210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 285
Target Start/End: Complemental strand, 39312131 - 39312031
Alignment:
Q  186 cactagttaaggagactaacatagaaatcttgcattgaaaattgtaaaaaagtgatatgtctaactttttaaaagt-caaacttcgttgtttttaagtaa 284  Q
    |||||||||||||||||||  || |||| ||||||| |||||| | |||||||| |||||| ||||||||||||||  ||| || |||||||| ||||||    
T  39312131 cactagttaaggagactaaattaaaaattttgcatttaaaattattaaaaagtggtatgtccaactttttaaaagtaaaaaatttgttgttttcaagtaa 39312032  T
Q  285 a 285  Q
    |    
T  39312031 a 39312031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 26040083 - 26040147
Alignment:
Q  163 aatgttaactaatgctcccgggacactagttaaggagactaacatagaaatcttgcattgaaaat 227  Q
    ||||||||||| | | || ||| |||||||||||| |||||| |||||||| |||||||| ||||    
T  26040083 aatgttaactagttcccctggggcactagttaaggggactaatatagaaattttgcattggaaat 26040147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 24514488 - 24514412
Alignment:
Q  189 tagttaaggagactaacatagaaatcttgcattgaaaattgtaaaaaagtgatatgtctaactttttaaaagtcaaa 265  Q
    |||||||||| ||||| |||||||| |||||||||||||||| |||||||||||||| ||| |||||||||||||||    
T  24514488 tagttaaggatactaatatagaaattttgcattgaaaattgttaaaaagtgatatgtttaagtttttaaaagtcaaa 24514412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 265
Target Start/End: Original strand, 12089180 - 12089282
Alignment:
Q  163 aatgttaactaatgctcccgggacactagttaaggagactaacatagaaatcttgcattgaaaattgtaaaaaagtgatatgtctaactttttaaaagtc 262  Q
    ||||||||| ||||| || |||||||||||||| |||| ||| |||||||| |||||||| ||||||| ||||| |  |||||  || ||||||||||||    
T  12089180 aatgttaaccaatgcccctgggacactagttaatgagattaatatagaaattttgcattggaaattgttaaaaacttgtatgttcaattttttaaaagtc 12089279  T
Q  263 aaa 265  Q
    |||    
T  12089280 aaa 12089282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 40555719 - 40555615
Alignment:
Q  159 gggtaatgttaactaatgctcccgggacactagttaaggagactaacatagaaatcttgcattgaaaattgtaaaaaagtgatatgtctaactttttaaa 258  Q
    ||||||||||||||| || ||||||| |||||| |||| |||||||  ||||||| ||||||||| |||||| ||||| |  |||||  |||||||||||    
T  40555719 gggtaatgttaactagtg-tcccggg-cactagataagtagactaatttagaaattttgcattgagaattgttaaaaaattgtatgttcaactttttaaa 40555622  T
Q  259 agtcaaa 265  Q
    |||||||    
T  40555621 agtcaaa 40555615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 289
Target Start/End: Complemental strand, 5156864 - 5156737
Alignment:
Q  161 gtaatgttaactaatgctcccgggacactagttaaggagactaacatagaaatcttgcattgaaaattgtaaaaaagtgatatgtctaactttttaaaag 260  Q
    ||||||||||||| || ||||||  ||||||||||  ||| ||  |||||||  |||||||||||||| | ||||| || |||||  |||||||||||||    
T  5156864 gtaatgttaactagtg-tcccggtgcactagttaaaaagattattatagaaactttgcattgaaaattattaaaaa-tggtatgttcaactttttaaaag 5156767  T
Q  261 tcaaa-cttcgttgtttttaagtaaaagtt 289  Q
    ||||| ||| |||||||| || ||||||||    
T  5156766 tcaaagctttgttgttttcaaataaaagtt 5156737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 159 - 289
Target Start/End: Original strand, 2910685 - 2910816
Alignment:
Q  159 gggtaatgttaactaatgctcccgggacactagttaaggagactaacatagaaatcttgcattgaaaattgtaaaaaagtgatatgtctaactttttaaa 258  Q
    ||||||||||||||  ||||||| || ||||||||||||||||||| | | |||  |||||||||||||||| |||||||| |||||  ||||||||||     
T  2910685 gggtaatgttaactggtgctcccagggcactagttaaggagactaataaaaaaagtttgcattgaaaattgttaaaaagtgctatgttcaactttttaag 2910784  T
Q  259 agtc-aaacttcgttgtttttaagtaaaagtt 289  Q
    |||| ||| || |||||||| || ||||||||    
T  2910785 agtcaaaattttgttgttttcaaataaaagtt 2910816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 161 - 286
Target Start/End: Complemental strand, 20521711 - 20521585
Alignment:
Q  161 gtaatgttaactaatgctcccgggacactagttaaggagactaacatagaaatcttgcattgaaaattgtaaaaaagtgatatgtctaactttttaaaag 260  Q
    ||||||||||||||||   |||| | | |||||||||||||| | |||  ||| |||||||| ||||||||||||||||  ||||  |||||||||||||    
T  20521711 gtaatgttaactaatgtctccggaatattagttaaggagactgatatatcaattttgcattggaaattgtaaaaaagtggaatgttcaactttttaaaag 20521612  T
Q  261 tc-aaacttcgttgtttttaagtaaaa 286  Q
    || |||||| |||||||| ||||||||    
T  20521611 tcaaaactttgttgttttcaagtaaaa 20521585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 286
Target Start/End: Original strand, 18196708 - 18196815
Alignment:
Q  180 ccgggacactagttaaggagactaacatagaaatcttgcattgaaaattgtaaaaaagtgatatgtctaactttttaaaagtc-aaacttcgttgttttt 278  Q
    ||||||||||||||||||||||| | |||  ||| |||||||| ||||||| ||||| |  ||||| |||||||||||||||| ||| || ||||||||     
T  18196708 ccgggacactagttaaggagactgatataacaattttgcattggaaattgttaaaaactagtatgtttaactttttaaaagtcaaaattttgttgttttc 18196807  T
Q  279 aagtaaaa 286  Q
    ||||||||    
T  18196808 aagtaaaa 18196815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 22271058 - 22270992
Alignment:
Q  224 aaattgtaaaaaagtgatatgtctaactttttaaaagtc-aaacttcgttgtttttaagtaaaagtt 289  Q
    ||||||| |||||||| |||||  ||||||||||||||| ||| || |||||||| |||||||||||    
T  22271058 aaattgttaaaaagtggtatgttcaactttttaaaagtcaaaagtttgttgttttcaagtaaaagtt 22270992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 286
Target Start/End: Complemental strand, 26784846 - 26784745
Alignment:
Q  186 cactagttaaggagactaacatagaaatcttgcattgaaaattgtaaaaaagtgatatgtctaactttttaaaagtc-aaacttcgttgtttttaagtaa 284  Q
    |||||||||||||||||||  ||||||| |||||||| ||||||| |||||||| |||||  ||||||||||||||| ||| || |||||||| ||||||    
T  26784846 cactagttaaggagactaatttagaaattttgcattggaaattgttaaaaagtggtatgttcaactttttaaaagtcaaaagtttgttgttttcaagtaa 26784747  T
Q  285 aa 286  Q
    ||    
T  26784746 aa 26784745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 265
Target Start/End: Original strand, 50623816 - 50623922
Alignment:
Q  158 agggtaatgttaactaatgctcccgggacactagttaaggagactaacatagaaatcttgcattgaaaattgtaaaaaagtgatatgtctaactttttaa 257  Q
    |||||||||||||||| ||| ||| | ||| |||||||| ||||||| ||  |||| || ||||||||||||| ||||| ||||||||  || |||||||    
T  50623816 agggtaatgttaactagtgcccccagaacattagttaag-agactaatatgaaaattttacattgaaaattgttaaaaaatgatatgttcaattttttaa 50623914  T
Q  258 aagtcaaa 265  Q
    ||||||||    
T  50623915 aagtcaaa 50623922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 34388670 - 34388725
Alignment:
Q  210 aaatcttgcattgaaaattgtaaaaaagtgatatgtctaactttttaaaagtcaaa 265  Q
    |||| |||||||| ||||||| |||||||| ||||| |||||||||||||||||||    
T  34388670 aaattttgcattggaaattgttaaaaagtggtatgtttaactttttaaaagtcaaa 34388725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 289
Target Start/End: Complemental strand, 25490635 - 25490560
Alignment:
Q  215 ttgcattgaaaattgtaaaaaagtgatatgtctaactttttaaaagtc-aaacttcgttgtttttaagtaaaagtt 289  Q
    ||||||||| |||||| |||||  | |||||  ||||||||||||||| |||||| |||||||| |||||||||||    
T  25490635 ttgcattgagaattgttaaaaaacggtatgttcaactttttaaaagtcaaaactttgttgttttcaagtaaaagtt 25490560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 286
Target Start/End: Complemental strand, 38778914 - 38778783
Alignment:
Q  156 aaagggtaatgttaactaatgctcccgggacactagttaaggagactaacatagaaatcttgcattgaaaattgtaaaaaagtgatatgtctaacttttt 255  Q
    |||||||||||||||||| || ||| ||| |||||| ||||||||||||  || |||| ||||||||||||| || ||||| |  |||||  ||||||||    
T  38778914 aaagggtaatgttaactagtgttcctggggcactagataaggagactaatttaaaaattttgcattgaaaatcgttaaaaaattgtatgttcaacttttt 38778815  T
Q  256 aaaagtc-aaacttcgttgtttttaagtaaaa 286  Q
    ||||||| ||| || |||||||| ||||||||    
T  38778814 aaaagtcaaaagtttgttgttttcaagtaaaa 38778783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 8257379 - 8257313
Alignment:
Q  156 aaagggtaatgttaactaatgctcccgggacactagttaaggagactaacatagaaatcttgcattg 222  Q
    |||||| |||||||||| |||| ||||||||| |||||||||||| ||| |||||||  ||||||||    
T  8257379 aaagggaaatgttaactgatgcccccgggacaatagttaaggagattaatatagaaactttgcattg 8257313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 277
Target Start/End: Complemental strand, 31776097 - 31776004
Alignment:
Q  184 gacactagttaaggagactaacatagaaatcttgcattgaaaattgtaaaaaagtgatatgtctaactttttaaaagtc-aaacttcgttgtttt 277  Q
    ||||||||||||| | ||||| |||||||  ||| ||||||||||||| |||||| |||| | |||||||||||| ||| |||||| ||||||||    
T  31776097 gacactagttaagaaaactaatatagaaagattgtattgaaaattgtagaaaagt-atatatttaactttttaaaggtcaaaactttgttgtttt 31776004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 2815719 - 2815778
Alignment:
Q  14 atttcatatgtcaaaaacattccaaaactcaattgttggtgtatggtttactgtgattaa 73  Q
    |||||||| ||||||||| || ||||||||||   |||||||||| ||||||||||||||    
T  2815719 atttcataagtcaaaaactttacaaaactcaaaaattggtgtatgctttactgtgattaa 2815778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 193632 - 193558
Alignment:
Q  191 gttaaggagactaacatagaaatcttgcattgaaaattgtaaaaaagtgatatgtctaactttttaaaagtcaaa 265  Q
    ||||||||||||||  ||||||| || ||||||||||||||||||| || |||||  ||||||||||||||||||    
T  193632 gttaaggagactaatttagaaattttacattgaaaattgtaaaaaaatggtatgttcaactttttaaaagtcaaa 193558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 289
Target Start/End: Complemental strand, 14158406 - 14158331
Alignment:
Q  215 ttgcattgaaaattgtaaaaaagtgatatgtctaactttttaaaagtc-aaacttcgttgtttttaagtaaaagtt 289  Q
    |||||||||||||||| |||||||| |||||  ||||||||||||||| ||| ||  ||||||| |||||||||||    
T  14158406 ttgcattgaaaattgttaaaaagtgttatgttcaactttttaaaagtcaaaattttattgttttcaagtaaaagtt 14158331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 265
Target Start/End: Original strand, 31238293 - 31238395
Alignment:
Q  163 aatgttaactaatgctcccgggacactagttaaggagactaacatagaaatcttgcattgaaaattgtaaaaaagtgatatgtctaactttttaaaagtc 262  Q
    ||||||||||| |||  || ||||||| ||||| |||||||| |||||||| |||||||| ||| ||   |||||||| ||||   ||||| ||||||||    
T  31238293 aatgttaactagtgcctccaggacacttgttaacgagactaatatagaaattttgcattggaaaatgatgaaaagtgaaatgttccactttataaaagtc 31238392  T
Q  263 aaa 265  Q
    |||    
T  31238393 aaa 31238395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 265
Target Start/End: Original strand, 31247663 - 31247765
Alignment:
Q  163 aatgttaactaatgctcccgggacactagttaaggagactaacatagaaatcttgcattgaaaattgtaaaaaagtgatatgtctaactttttaaaagtc 262  Q
    ||||||||||| |||  || ||||||| ||||| |||||||| |||||||| |||||||| ||| ||   |||||||| ||||   ||||| ||||||||    
T  31247663 aatgttaactagtgcctccaggacacttgttaacgagactaatatagaaattttgcattggaaaatgatgaaaagtgaaatgttccactttataaaagtc 31247762  T
Q  263 aaa 265  Q
    |||    
T  31247763 aaa 31247765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 22315026 - 22315085
Alignment:
Q  163 aatgttaactaatgctcccgggacactagttaaggagactaacatagaaatcttgcattg 222  Q
    ||||||||||| ||| |||| | ||||||||||||||||||| |||||| | ||||||||    
T  22315026 aatgttaactagtgcccccgaggcactagttaaggagactaatatagaagttttgcattg 22315085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University