View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9707_high_9 (Length: 312)
Name: NF9707_high_9
Description: NF9707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9707_high_9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 53957049 - 53957367
Alignment:
| Q |
17 |
caagatgggggctcccccattcaatctgttccttgatcctgatcttactttaagtgtggctgctccttttaatgctacagttagccaacaatttttgttc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53957049 |
caagatgggggctcccccattcaatctgttccttgatcctgatcttactttaagtgtggctgctccttttaatgctacagttagccaacaatttttgttc |
53957148 |
T |
|
| Q |
117 |
agtaacagattttgttcacccatattaaattttaaaaaataattgacataaaaagtttattttttattggt-----ggggggtcatgttatgactgtaaa |
211 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
53957149 |
agtaacaga--ttgttcacccatattaaatttaaaaaaataattgacataaaaagtttattttttattggtgggggggggggtcatgttatgactgtaaa |
53957246 |
T |
|
| Q |
212 |
tcttttgctaattctagcatatata--------------------taataccccaaaactatgaaccacgaacactcattggattagacgtgtcccaccg |
291 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
53957247 |
tcttttgctaattctagcatatatatatatatatatatatatatgtaataccccaaaactatgaaccacagacactcattggattagacgtgtcccaccg |
53957346 |
T |
|
| Q |
292 |
acacatataattacactgaat |
312 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
53957347 |
acaaatataattacactgaat |
53957367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 250 - 308
Target Start/End: Complemental strand, 17124276 - 17124216
Alignment:
| Q |
250 |
ctatgaaccacgaacactcattggattagacgtgtcc--caccgacacatataattacact |
308 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||| | |||||| ||||||||||||||| |
|
|
| T |
17124276 |
ctatgaaccacggacactcatcggattagacgtgttcgacaccgatacatataattacact |
17124216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 34691770 - 34691833
Alignment:
| Q |
251 |
tatgaaccacgaacactcattggattagacgtgtcc--caccgacacatataattacactgaat |
312 |
Q |
| |
|
|||||| |||| |||||| | ||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
34691770 |
tatgaaacacggacactcctcggattaggcgtgtccgacaccgacacatataattacactgaat |
34691833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 34714182 - 34714245
Alignment:
| Q |
251 |
tatgaaccacgaacactcattggattagacgtgtcc--caccgacacatataattacactgaat |
312 |
Q |
| |
|
|||||| |||| |||||| | ||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
34714182 |
tatgaaacacggacactcctcggattaggcgtgtccgacaccgacacatataattacactgaat |
34714245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 31855772 - 31855836
Alignment:
| Q |
250 |
ctatgaaccacgaacactcattggattagacgtgtcc--caccgacacatataattacactgaat |
312 |
Q |
| |
|
||||||| |||||||||| || |||||||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
31855772 |
ctatgaagtacgaacactccttagattagacgtgttcgacaccgacacatctaattacactgaat |
31855836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University