View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9707_low_12 (Length: 237)
Name: NF9707_low_12
Description: NF9707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9707_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 42309752 - 42309543
Alignment:
| Q |
11 |
agcagagagactgtttgattggttgatttacttgatgaagctaaaagccgctgtaaagatactcttcttgaacgtggtaagtaagagttgcctattgcaa |
110 |
Q |
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| T |
42309752 |
agcagcgagactgttagattggttgatttacttgatgaagctaaaagccgctgtaaagatactcttcttgaacgtggtaagtaagaattgcctattgcaa |
42309653 |
T |
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| Q |
111 |
ttattattccttcgtgcgatccaaaatcaaagaaatgaagtttctgtttaagatatatgaaactggtattatgcatcagacagttaaccttctaattcct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42309652 |
ttattattccttcgtgcgatccaaaatcaaagaaatgaagtttctgtttaagatatatgaaactggtattatgcatcagacagttaaccttctaattcct |
42309553 |
T |
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| Q |
211 |
ttgttcatct |
220 |
Q |
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|||||||||| |
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| T |
42309552 |
ttgttcatct |
42309543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 51569028 - 51569240
Alignment:
| Q |
17 |
gagactgtttgattggttgatttacttgatgaagctaaaagccgctgtaaagatactcttcttgaacgtggt-aagtaagagttgcctattgcaattatt |
115 |
Q |
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||||||||| |||| |||||||||||||||||||||||||| |||||||||| | ||||||||||||||||| ||||| |||||| |||||||||| || |
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| T |
51569028 |
gagactgttcgattagttgatttacttgatgaagctaaaaggcgctgtaaagttgctcttcttgaacgtggtaaagtaccagttgcttattgcaattttt |
51569127 |
T |
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| Q |
116 |
a----ttccttcgtgcgatccaaaatcaaagaaatgaagtttctgttt----aagatatatgaaactggtattatgcatcagacagttaaccttctaatt |
207 |
Q |
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| T |
51569128 |
atttcttccttcatgcaaaccagaatcaaagaaatgaagtttctgtttgttgaagatctatggaactgatattatgcattagacagttaaccttctaaat |
51569227 |
T |
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| Q |
208 |
cctttgttcatct |
220 |
Q |
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||| ||||||||| |
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| T |
51569228 |
cctatgttcatct |
51569240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 47973900 - 47973682
Alignment:
| Q |
11 |
agcagagagactgtttgattggttgatttacttgatgaagctaaaagccgctgtaaagatactcttcttgaacgtggt-aagtaagagttgcctattgca |
109 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||| ||||| | |||||||||||| |
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| T |
47973900 |
agcagcgagactgttcgattggttgatttacttgatgaagctaaaaggcgctgtaaagttgctcttcttgaacgtggtaaagtaccatttgcctattgca |
47973801 |
T |
|
| Q |
110 |
attatta----ttccttcgtgcgatccaaaatcaaagaaatgaagtttctgttt----aagatatatgaaactggtattatgcatcagacagttaacctt |
201 |
Q |
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||| ||| ||||||| || || ||| ||||||| ||||||||||||||||| ||||| |||| ||||| |||| ||||| |||||||||||||| |
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| T |
47973800 |
atttttatttcttccttcatgtgagccagaatcaaataaatgaagtttctgtttgtggaagatctatggaactgatattgtgcattagacagttaacctt |
47973701 |
T |
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| Q |
202 |
ctaattcctttgttcatct |
220 |
Q |
| |
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|||| ||| ||||||||| |
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| T |
47973700 |
ctaaatcccatgttcatct |
47973682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 34031955 - 34032016
Alignment:
| Q |
29 |
ttggttgatttacttgatgaagctaaaagccgctgtaaagatactcttcttgaacgtggtaa |
90 |
Q |
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||||||||||| ||||||||||||||||| ||||||||| | | ||||||||||||||||| |
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| T |
34031955 |
ttggttgatttgcttgatgaagctaaaaggcgctgtaaaactgcccttcttgaacgtggtaa |
34032016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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