View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9707_low_14 (Length: 234)
Name: NF9707_low_14
Description: NF9707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9707_low_14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 44450244 - 44450466
Alignment:
| Q |
1 |
ccttttgtcattagtaaccaccaacacttgacttataacataaccaatggttataaacttgtcttactctgacataccaccacacaaaaggggagtacta |
100 |
Q |
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| T |
44450244 |
ccttttgccattagtaaccaccaacacttgacttataacataaccaatggttataaacttgtcttactctgacataccaccacacaaaaggggagtacta |
44450343 |
T |
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| Q |
101 |
cgacgggatggatgtattcacatttcaatcaaataaaatataactcttatgtacagtcgcttaattcaaataagtatcaaataagttatcaattgactct |
200 |
Q |
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| T |
44450344 |
cgacgggatggatgtattcacatttcaatcaaataaaatataactcttatgtacagtcgcttaat-----------tcaaataagttatcaattgagtct |
44450432 |
T |
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| Q |
201 |
caagactaaccactccacctttaatttagtctca |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
44450433 |
caagactaaccactccacctttaatttagtctca |
44450466 |
T |
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