View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9707_low_16 (Length: 209)

Name: NF9707_low_16
Description: NF9707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9707_low_16
NF9707_low_16
[»] chr3 (11 HSPs)
chr3 (7-209)||(24840295-24840497)
chr3 (7-209)||(19943314-19943516)
chr3 (11-207)||(26651632-26651828)
chr3 (11-209)||(19818156-19818354)
chr3 (71-208)||(19853171-19853308)
chr3 (11-209)||(26646609-26646807)
chr3 (16-209)||(19811884-19812077)
chr3 (65-208)||(19857723-19857866)
chr3 (76-209)||(19989186-19989319)
chr3 (164-209)||(20005306-20005351)
chr3 (100-207)||(19950812-19950919)
[»] chr5 (3 HSPs)
chr5 (11-209)||(9814636-9814834)
chr5 (76-209)||(26355248-26355381)
chr5 (11-84)||(2319480-2319553)
[»] chr1 (1 HSPs)
chr1 (19-146)||(1716818-1716945)
[»] chr7 (3 HSPs)
chr7 (11-84)||(48259460-48259533)
chr7 (11-84)||(45887493-45887566)
chr7 (11-84)||(47331714-47331787)
[»] chr4 (1 HSPs)
chr4 (11-84)||(55864472-55864545)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 24840497 - 24840295
Alignment:
Q  7 gaagcaaaggagtggcctttgaaaatccatttcaatgggtggcactacccacaagagaaatggattaagtgggttgatgaacttcagctcaaatatgaat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24840497 gaagcaaaggagtggcctttgaaaatccatttcaatgggtggcactacccacatgagaaatggattaagtgggttgatgaacttcagctcaaatatgaat 24840398  T
Q  107 cggtgtggaaaaaagcttgcatctttgaacctataatgagtactaagagctgcataattaaaaaccaagacttggtttgtggggttgttgagaaatggtg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24840397 cggtgtggaaaaaagcttgcatctttgaacctataatgagtactaagagctgcataattaaaaaccaagacttggtttgtggggttgttgagaaatggtg 24840298  T
Q  207 ttg 209  Q
    |||    
T  24840297 ttg 24840295  T

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Target: chr3; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 19943314 - 19943516
Alignment:
Q  7 gaagcaaaggagtggcctttgaaaatccatttcaatgggtggcactacccacaagagaaatggattaagtgggttgatgaacttcagctcaaatatgaat 106  Q
    |||||||||||||| || || |||||| | |||||||||||||||| ||| |||||||||||| ||||||||||||| |||||| ||| |||||||||||    
T  19943314 gaagcaaaggagtgtcccttcaaaatcaacttcaatgggtggcactcccctcaagagaaatgggttaagtgggttgacgaacttaagcccaaatatgaat 19943413  T
Q  107 cggtgtggaaaaaagcttgcatctttgaacctataatgagtactaagagctgcataattaaaaaccaagacttggtttgtggggttgttgagaaatggtg 206  Q
    | || |||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  19943414 cagtatggaaaaaagctagaatctttgaacctataatgagtattaagagctgcataattaaaaatcaagacttggtttgtgggattgttgagaaatggtg 19943513  T
Q  207 ttg 209  Q
    |||    
T  19943514 ttg 19943516  T

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Target: chr3; HSP #3
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 26651632 - 26651828
Alignment:
Q  11 caaaggagtggcctttgaaaatccatttcaatgggtggcactacccacaagagaaatggattaagtgggttgatgaacttcagctcaaatatgaatcggt 110  Q
    ||||||| |||||||||||||||| ||||||  ||||||  ||||||||   ||||||| |||||||||||||| ||||| ||| ||| |||||||| ||    
T  26651632 caaaggaatggcctttgaaaatccgtttcaactggtggcgttacccacacacgaaatgggttaagtgggttgatcaacttaagcccaagtatgaatcagt 26651731  T
Q  111 gtggaaaaaagcttgcatctttgaacctataatgagtactaagagctgcataattaaaaaccaagacttggtttgtggggttgttgagaaatggtgt 207  Q
    ||||||||||||  |||||||||||||||||||||||||||||||| || |||| ||||| ||||||||||||| |||| ||  |||||||||||||    
T  26651732 gtggaaaaaagccggcatctttgaacctataatgagtactaagagccgcgtaatgaaaaatcaagacttggtttatgggatttctgagaaatggtgt 26651828  T

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Target: chr3; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 19818156 - 19818354
Alignment:
Q  11 caaaggagtggcctttgaaaatccatttcaatgggtggcactacccacaagagaaatggattaagtgggttgatgaacttcagctcaaatatgaatcggt 110  Q
    |||| ||||| ||||||||||| ||||||||||| |||| | | | ||||||||||||| |||  ||||||||||||||| | |  || |||||||| ||    
T  19818156 caaatgagtgtcctttgaaaatacatttcaatggatggcgccaacaacaagagaaatggtttagttgggttgatgaacttaaaccaaagtatgaatctgt 19818255  T
Q  111 gtggaaaaaagcttgcatctttgaacctataatgagtactaagagctgcataattaaaaaccaagacttggtttgtggggttgttgagaaatggtgttg 209  Q
    |||||| |||||| | ||||||||  |||| |||||||||||  ||| |||   |||||| ||| ||||| | | ||||||||||||||||||||||||    
T  19818256 gtggaagaaagctagaatctttgatgctattatgagtactaaatgctacattcataaaaatcaaaacttgctatttggggttgttgagaaatggtgttg 19818354  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 19853171 - 19853308
Alignment:
Q  71 ttaagtgggttgatgaacttcagctcaaatatgaatcggtgtggaaaaaagcttgcatctttgaacctataatgagtactaagagctgcataattaaaaa 170  Q
    |||||||||||||| ||||||| ||||||||||||||  | ||||| |||| | | ||||||||  |||| ||||||||||||||||||||||  ||| |    
T  19853171 ttaagtgggttgatcaacttcaactcaaatatgaatcactatggaagaaagttggaatctttgatgctattatgagtactaagagctgcataaagaaaga 19853270  T
Q  171 ccaagacttggtttgtggggttgttgagaaatggtgtt 208  Q
     ||| ||||| | |||||||||||||| ||||||||||    
T  19853271 tcaaaacttgttatgtggggttgttgacaaatggtgtt 19853308  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 26646609 - 26646807
Alignment:
Q  11 caaaggagtggcctttgaaaatccatttcaatgggtggcactacccacaagagaaatggattaagtgggttgatgaacttcagctcaaatatgaatcggt 110  Q
    ||||||||||||||||||||||| | |||| ||| ||||    |||||  |  |||||| |||  ||||||||| ||||| | |||||||||||| | ||    
T  26646609 caaaggagtggcctttgaaaatcaacttcactggttggcgtcgcccacgcgccaaatgggttagatgggttgatcaacttaaactcaaatatgaaacagt 26646708  T
Q  111 gtggaaaaaagcttgcatctttgaacctataatgagtactaagagctgcataattaaaaaccaagacttggtttgtggggttgttgagaaatggtgttg 209  Q
    |||||| |||| | ||||||||||| | |||||| | || | | || |||||  |||||| || |||||| | | |||||| |||||||||||||||||    
T  26646709 gtggaagaaagttggcatctttgaagcaataatgggcacaaggtgccgcatacataaaaatcatgacttgctatatggggtagttgagaaatggtgttg 26646807  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 19811884 - 19812077
Alignment:
Q  16 gagtggcctttgaaaatccatttcaatgggtggcactacccacaagagaaatggattaagtgggttgatgaacttcagctcaaatatgaatcggtgtgga 115  Q
    ||||| ||||||||||||||||||| ||| ||||   ||||||||||||| ||| |||  ||||||||||| ||| | |  || ||||||||  ||||||    
T  19811884 gagtgtcctttgaaaatccatttcagtggatggcgtcacccacaagagaagtgggttagatgggttgatgagcttaaaccaaagtatgaatctttgtgga 19811983  T
Q  116 aaaaagcttgcatctttgaacctataatgagtactaagagctgcataattaaaaaccaagacttggtttgtggggttgttgagaaatggtgttg 209  Q
    | |||||| | ||||||||  |||| |||||||| ||| |   |||| | ||||| | | | ||| | | ||||||||||||||||||||||||    
T  19811984 agaaagctagaatctttgatgctattatgagtaccaagtgtcacatactcaaaaatctaaaattgctctttggggttgttgagaaatggtgttg 19812077  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 208
Target Start/End: Original strand, 19857723 - 19857866
Alignment:
Q  65 aatggattaagtgggttgatgaacttcagctcaaatatgaatcggtgtggaaaaaagcttgcatctttgaacctataatgagtactaagagctgcataat 164  Q
    ||||| |||||||||||||  ||||||| |  ||||||||||| |||||||| ||||||   || |||||  |||| | |||||||||  || |||||||    
T  19857723 aatgggttaagtgggttgaccaacttcaaccaaaatatgaatctgtgtggaagaaagctgaaatttttgatgctattaggagtactaaatgccgcataat 19857822  T
Q  165 taaaaaccaagacttggtttgtggggttgttgagaaatggtgtt 208  Q
     ||| | | | ||||||||| |||||||||||| ||||||||||    
T  19857823 gaaagatccaaacttggtttatggggttgttgacaaatggtgtt 19857866  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 209
Target Start/End: Original strand, 19989186 - 19989319
Alignment:
Q  76 tgggttgatgaacttcagctcaaatatgaatcggtgtggaaaaaagcttgcatctttgaacctataatgagtactaagagctgcataattaaaaaccaag 175  Q
    ||||||||| ||||| | | ||||| |||||  |||||||| |||| | ||||||||||| |||| |||||||| ||| | |||||||  ||| | ||      
T  19989186 tgggttgatcaacttaaacccaaatttgaatatgtgtggaagaaagttggcatctttgaagctattatgagtaccaagtgttgcataaagaaagatcata 19989285  T
Q  176 acttggtttgtggggttgttgagaaatggtgttg 209  Q
    ||||| | | ||||||||||||||||||||||||    
T  19989286 acttgctatttggggttgttgagaaatggtgttg 19989319  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 20005351 - 20005306
Alignment:
Q  164 ttaaaaaccaagacttggtttgtggggttgttgagaaatggtgttg 209  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||    
T  20005351 ttaaaaatcaagacttggtttgtgggattgttgagaaatggtgttg 20005306  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 207
Target Start/End: Original strand, 19950812 - 19950919
Alignment:
Q  100 tatgaatcggtgtggaaaaaagcttgcatctttgaacctataatgagtactaagagctgcataattaaaaaccaagacttggtttgtggggttgttgaga 199  Q
    |||||||| |||||||| |||||| | ||||||||  |||| ||||||||||| |||   |||  |||||| ||  ||||| ||| ||||||||||||||    
T  19950812 tatgaatctgtgtggaagaaagctggaatctttgatgctattatgagtactaaaagcataatacataaaaatcataacttgctttttggggttgttgaga 19950911  T
Q  200 aatggtgt 207  Q
    ||||||||    
T  19950912 aatggtgt 19950919  T

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Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 9814636 - 9814834
Alignment:
Q  11 caaaggagtggcctttgaaaatccatttcaatgggtggcactacccacaagagaaatggattaagtgggttgatgaacttcagctcaaatatgaatcggt 110  Q
    |||| ||||||||||||||| ||||||||||||| ||||  ||||||||||||||||||||| | ||||||||| ||||| | |  || ||||||||  |    
T  9814636 caaatgagtggcctttgaaattccatttcaatggatggcgttacccacaagagaaatggatttattgggttgatcaacttaaaccaaagtatgaatcttt 9814735  T
Q  111 gtggaaaaaagcttgcatctttgaacctataatgagtactaagagctgcataattaaaaaccaagacttggtttgtggggttgttgagaaatggtgttg 209  Q
    |||||| ||||   | ||||||||  ||||||||||||| ||| || ||||||| ||| | ||| ||||| | | ||||||||||||||||||||||||    
T  9814736 gtggaagaaagtaggtatctttgatgctataatgagtaccaagtgccgcataatgaaagatcaaaacttgctatatggggttgttgagaaatggtgttg 9814834  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 209
Target Start/End: Complemental strand, 26355381 - 26355248
Alignment:
Q  76 tgggttgatgaacttcagctcaaatatgaatcggtgtggaaaaaagcttgcatctttgaacctataatgagtactaagagctgcataattaaaaaccaag 175  Q
    ||||||||| ||||| |||||||||||||| |||| ||||| |||||| | || |||||  ||||||||||||| ||  || ||||| | ||||| |||     
T  26355381 tgggttgatcaacttaagctcaaatatgaaccggtttggaagaaagctgggatttttgatgctataatgagtaccaaatgccgcatactgaaaaatcaaa 26355282  T
Q  176 acttggtttgtggggttgttgagaaatggtgttg 209  Q
    ||||| |||  |||||||| ||||||||||||||    
T  26355281 acttgctttacggggttgtggagaaatggtgttg 26355248  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 2319553 - 2319480
Alignment:
Q  11 caaaggagtggcctttgaaaatccatttcaatgggtggcactacccacaagagaaatggattaagtgggttgat 84  Q
    |||| ||||||||||||||| ||||||||||||| ||||   |||||||||||||||||||| | |||||||||    
T  2319553 caaatgagtggcctttgaaattccatttcaatggatggcgtcacccacaagagaaatggatttattgggttgat 2319480  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 1716818 - 1716945
Alignment:
Q  19 tggcctttgaaaatccatttcaatgggtggcactacccacaagagaaatggattaagtgggttgatgaacttcagctcaaatatgaatcggtgtggaaaa 118  Q
    ||||||||||||||||||||||||||||||| | | | | |    ||||||  ||||||||||||||||||| | |||||| ||||| | |||||||| |    
T  1716818 tggcctttgaaaatccatttcaatgggtggcgccaacaaaactcaaaatgggataagtgggttgatgaacttaaactcaaacatgaaacagtgtggaaga 1716917  T
Q  119 aagcttgcatctttgaacctataatgag 146  Q
    ||| | ||||||||||| ||||||||||    
T  1716918 aagttggcatctttgaagctataatgag 1716945  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 48259533 - 48259460
Alignment:
Q  11 caaaggagtggcctttgaaaatccatttcaatgggtggcactacccacaagagaaatggattaagtgggttgat 84  Q
    |||| ||||||||||||||| ||||||||||||| ||||   |||||||||||||||||||| | |||||||||    
T  48259533 caaatgagtggcctttgaaattccatttcaatggatggcgtcacccacaagagaaatggatttattgggttgat 48259460  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 45887566 - 45887493
Alignment:
Q  11 caaaggagtggcctttgaaaatccatttcaatgggtggcactacccacaagagaaatggattaagtgggttgat 84  Q
    |||| ||||||||||||||| ||||||||||||| ||||   |||||||||||||||| ||| | |||||||||    
T  45887566 caaatgagtggcctttgaaattccatttcaatggatggcgtcacccacaagagaaatgtatttattgggttgat 45887493  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 47331714 - 47331787
Alignment:
Q  11 caaaggagtggcctttgaaaatccatttcaatgggtggcactacccacaagagaaatggattaagtgggttgat 84  Q
    |||| |||||| |||||||| ||||||||||||| ||||   |||||||||||||||||||| | |||||||||    
T  47331714 caaatgagtggtctttgaaattccatttcaatggatggcgtcacccacaagagaaatggatttattgggttgat 47331787  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 55864545 - 55864472
Alignment:
Q  11 caaaggagtggcctttgaaaatccatttcaatgggtggcactacccacaagagaaatggattaagtgggttgat 84  Q
    |||| ||||||||||||||| ||||||||||||| ||||   |||||||||||||||||||| | |||||||||    
T  55864545 caaatgagtggcctttgaaattccatttcaatggttggcgtcacccacaagagaaatggatttattgggttgat 55864472  T

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